Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6961

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6960: 15328 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 540769 to 543741 15328 mRNA_6961: 15329 - Hypothetical Protein, at 543904 to 547836 15329 mRNA_6962: 15330 - K03132 TAF7 transcription initiation factor TFIID subunit 7, at 547886 to 549459 15330

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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543,367 + 15328 mRNA_6960 0.87 0.3
543,625 - -2.0
543,638 - 0.7
543,797 - 3.5
544,113 + 3.9
544,371 - 15329 mRNA_6961 0.12 0.0
544,494 - 15329 mRNA_6961 0.15 -0.1
544,494 - 15329 mRNA_6961 0.15 -0.1
544,506 + 15329 mRNA_6961 0.15 1.5
544,580 + 15329 mRNA_6961 0.17 0.2
544,794 - 15329 mRNA_6961 0.23 1.5
544,815 - 15329 mRNA_6961 0.23 0.4
544,933 - 15329 mRNA_6961 0.26 0.9
545,008 - 15329 mRNA_6961 0.28 0.1
545,111 + 15329 mRNA_6961 0.31 0.3
545,401 + 15329 mRNA_6961 0.38 -0.9
545,547 + 15329 mRNA_6961 0.42 0.3
545,563 + 15329 mRNA_6961 0.42 1.0
545,654 + 15329 mRNA_6961 0.44 -0.0
545,696 - 15329 mRNA_6961 0.46 2.9
545,823 - 15329 mRNA_6961 0.49 -0.8
545,844 - 15329 mRNA_6961 0.49 -0.0
545,846 + 15329 mRNA_6961 0.49 1.8
545,967 + 15329 mRNA_6961 0.52 2.4
545,996 - 15329 mRNA_6961 0.53 0.9
546,038 + 15329 mRNA_6961 0.54 -1.0
546,144 - 15329 mRNA_6961 0.57 1.4
546,176 + 15329 mRNA_6961 0.58 1.1
546,176 - 15329 mRNA_6961 0.58 0.3
546,605 - 15329 mRNA_6961 0.69 0.5
547,218 - 15329 mRNA_6961 0.84 0.5
547,237 - 15329 mRNA_6961 0.85 -0.1
547,478 + 0.2
547,498 + 1.9
547,613 - -1.1
547,647 + -0.3
547,653 + 0.9
547,662 + 2.5
547,828 + 2.1
548,254 - 15330 mRNA_6962 0.23 -1.4