Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6955

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6954: 15322 - K10591 NEDD4, RSP5 E3 ubiquitin-protein ligase NEDD4, at 519193 to 522362 15322 mRNA_6955: 15323 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 523015 to 527499 15323 mRNA_6956: 15324 - K00720 UGCG ceramide glucosyltransferase, at 528007 to 529680 15324

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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522,410 + 0.8
522,571 + 0.3
522,657 - 0.4
522,672 - 1.3
522,675 + 0.1
522,732 - -1.5
522,735 + 3.7
522,736 - 0.3
522,743 - 0.5
522,749 - -0.6
522,749 - -0.3
522,750 + 1.7
522,779 + 0.1
522,796 + 1.2
522,799 + -1.0
522,799 - -0.2
522,800 - -3.0
522,806 - 1.8
522,809 - 0.2
522,826 - -0.9
522,938 - 2.6
522,946 + 0.0
522,946 - 1.5
522,947 - -0.2
522,950 + 0.5
522,951 - 0.9
522,954 - 1.6
522,966 + -1.0
522,969 + -2.0
522,974 - 0.5
522,982 + 0.9
522,991 + -0.9
522,999 + 0.1
523,008 + -0.4
523,101 + 0.8
523,103 - 0.7
523,118 - 0.4
523,155 - 0.7
523,255 + 1.0
523,293 + -1.1
523,579 - 15323 mRNA_6955 0.13 -0.1
523,720 - 15323 mRNA_6955 0.16 -0.9
523,724 - 15323 mRNA_6955 0.16 -0.3
524,039 - 15323 mRNA_6955 0.23 2.1
524,182 + 15323 mRNA_6955 0.26 1.5
524,610 + 15323 mRNA_6955 0.36 1.7
524,929 - 15323 mRNA_6955 0.43 0.3
525,443 - 15323 mRNA_6955 0.54 -0.6
525,483 + 15323 mRNA_6955 0.55 -0.2
525,989 + 15323 mRNA_6955 0.66 0.1
526,029 - 15323 mRNA_6955 0.67 0.8
526,307 - 15323 mRNA_6955 0.73 -0.1
526,379 - 15323 mRNA_6955 0.75 0.2
526,581 - 15323 mRNA_6955 0.80 -2.1
526,775 + 15323 mRNA_6955 0.84 -0.2
527,203 - -1.0
527,963 + 0.5
528,061 - 0.4
528,092 + 0.6
528,386 - 15324 mRNA_6956 0.23 0.9