Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6953

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6952: 15320 - K11858 USP48 ubiquitin carboxyl-terminal hydrolase 48, at 512124 to 517290 15320 mRNA_6953: 15321 - K13719 OTU1, YOD1 ubiquitin thioesterase OTU1, at 517419 to 518782 15321 mRNA_6954: 15322 - K10591 NEDD4, RSP5 E3 ubiquitin-protein ligase NEDD4, at 519193 to 522362 15322

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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516,762 + 15320 mRNA_6952 0.90 0.2
516,765 + 15320 mRNA_6952 0.90 -0.8
516,769 + 15320 mRNA_6952 0.90 -0.1
516,906 + 1.4
517,043 - 1.2
517,054 - -0.6
517,182 - 0.3
517,216 - 0.1
517,302 - 1.9
517,321 - 0.3
517,502 + 0.2
517,690 - 15321 mRNA_6953 0.20 1.2
517,965 + 15321 mRNA_6953 0.40 0.2
517,995 + 15321 mRNA_6953 0.42 -0.1
518,562 + 15321 mRNA_6953 0.84 2.4
518,578 - 15321 mRNA_6953 0.85 -0.4
518,584 + 15321 mRNA_6953 0.85 0.9
518,697 - 0.5
518,724 + 0.3
518,742 - -0.1
518,855 - 0.5
518,860 - 0.4
518,864 - -1.6
518,866 + -1.0
518,873 + 2.6
518,949 - 0.5
518,980 - 0.0
518,981 + -0.3
518,989 - 1.1
518,993 - 2.1
518,996 - 0.1
518,998 + -0.3
519,000 + -0.5
519,007 - 0.2
519,015 - -0.1
519,016 - -1.1
519,045 - -0.1
519,054 - 1.2