Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6923

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6922: 15290 - KOG4121 Nuclear pore complex, Nup133 component (sc Nup133), at 436165 to 438557 15290 mRNA_6923: 15291 - Hypothetical Protein, at 439430 to 443984 15291 mRNA_6924: 15292 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 444538 to 446309 15292

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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438,627 - 0.1
438,782 - -0.7
438,813 + -1.9
439,209 + 0.5
439,432 - 2.7
439,748 + 0.6
439,878 - 0.8
439,947 + 15291 mRNA_6923 0.11 0.4
439,947 + 15291 mRNA_6923 0.11 0.3
440,131 + 15291 mRNA_6923 0.15 -0.4
440,771 + 15291 mRNA_6923 0.29 0.0
440,962 + 15291 mRNA_6923 0.34 0.2
441,408 - 15291 mRNA_6923 0.43 -1.0
441,422 + 15291 mRNA_6923 0.44 -1.5
441,493 + 15291 mRNA_6923 0.45 0.3
442,042 - 15291 mRNA_6923 0.57 -1.0
442,193 - 15291 mRNA_6923 0.61 1.5
442,288 - 15291 mRNA_6923 0.63 0.5
442,557 + 15291 mRNA_6923 0.69 1.5
442,587 - 15291 mRNA_6923 0.69 2.7
443,054 - 15291 mRNA_6923 0.80 0.6
443,603 - 1.2
443,634 - -0.9
443,757 + -2.2
443,907 - 0.6
443,920 - -0.1
444,077 - -0.1
444,081 - 0.5
444,230 + -0.7
444,243 + -0.5
444,393 - 1.6
444,395 - 0.4
444,400 - 0.7
444,400 - -0.2
444,405 - 0.7
444,418 + -0.6
444,448 + 0.4
444,504 - 1.4
444,505 + 1.6
444,541 + 0.2
444,796 + 15292 mRNA_6924 0.15 0.4
444,797 + 15292 mRNA_6924 0.15 0.4