Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6911

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6910: 15278 - KOG2287 Galactosyltransferases, at 411729 to 414888 15278 mRNA_6911: 15279 - K03660 OGG1 N-glycosylase/DNA lyase, at 415549 to 417203 15279 mRNA_6912: 15280 - K12833 SF3B14 pre-mRNA branch site protein p14, at 417441 to 418066 15280

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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414,847 + 2.0
414,865 - -0.2
414,970 - 0.2
414,987 + -2.2
415,114 - 0.8
415,123 - 0.1
415,141 + 0.9
415,271 + 0.2
415,309 + 1.7
415,428 - 1.1
415,440 - -0.4
415,453 + 0.0
415,465 - 1.5
415,467 - 0.5
415,470 + 1.2
415,484 + 0.2
415,487 + 0.5
415,590 + 0.2
415,595 + 3.2
415,603 + 0.1
415,605 - 0.0
415,614 - -0.3
415,736 + 15279 mRNA_6911 0.11 -0.8
415,742 - 15279 mRNA_6911 0.12 -0.4
415,746 - 15279 mRNA_6911 0.12 -0.5
415,746 - 15279 mRNA_6911 0.12 -0.3
415,771 - 15279 mRNA_6911 0.13 -0.7
415,772 + 15279 mRNA_6911 0.13 0.9
415,786 + 15279 mRNA_6911 0.14 1.7
415,787 + 15279 mRNA_6911 0.14 -0.2
415,789 + 15279 mRNA_6911 0.15 0.3
415,792 - 15279 mRNA_6911 0.15 1.4
416,088 + 15279 mRNA_6911 0.33 1.6
416,233 - 15279 mRNA_6911 0.41 0.5
416,237 + 15279 mRNA_6911 0.42 2.0
416,245 - 15279 mRNA_6911 0.42 0.0
416,651 - 15279 mRNA_6911 0.67 -1.6
416,663 - 15279 mRNA_6911 0.67 -1.0
416,937 - 15279 mRNA_6911 0.84 0.4