Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6909

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6908: 15276 - K01907 AACS, acsA acetoacetyl-CoA synthetase, at 405479 to 408297 15276 mRNA_6909: 15277 - K14315 NDC1, TMEM48 nucleoporin NDC1, at 408529 to 411391 15277 mRNA_6910: 15278 - KOG2287 Galactosyltransferases, at 411729 to 414888 15278

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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407,652 + 15276 mRNA_6908 0.77 -0.5
407,803 + 15276 mRNA_6908 0.82 -0.7
408,090 + -1.2
408,206 + -0.6
408,207 - 0.1
408,217 - -0.2
408,223 + -0.6
408,361 - 1.3
408,365 - 0.1
408,366 - 0.7
408,377 - 2.5
408,412 + 0.5
408,413 - -0.8
408,417 - -0.3
408,420 + -0.6
408,420 - -0.2
408,420 - -0.6
408,421 + 0.6
408,455 - -0.0
408,468 + -0.8
408,484 + 1.2
408,489 - 2.0
408,509 - 2.8
408,835 - 15277 mRNA_6909 0.11 1.2
409,478 + 15277 mRNA_6909 0.33 -0.5
409,730 - 15277 mRNA_6909 0.42 -1.2
409,867 - 15277 mRNA_6909 0.47 1.3
410,031 - 15277 mRNA_6909 0.52 1.1
410,201 - 15277 mRNA_6909 0.58 -0.2
410,890 - 15277 mRNA_6909 0.82 0.1
411,446 - 0.7
411,468 - 0.5
411,469 + 2.8
411,481 + -0.2
411,594 - -0.0