Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6905

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6904: 15272 - HMMPfam-CTLH/CRA C-terminal to LisH motif domain-PF10607,ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896,SMART-CT11-RanBPM-SM00757, at 395182 to 396886 15272 mRNA_6905: 15273 - K14300 NUP133 nuclear pore complex protein Nup133, at 397122 to 402305 15273 mRNA_6906: 15274 - Hypothetical Protein, at 402652 to 403078 15274 mRNA_6907: 15275 - K14016 UFD1 ubiquitin fusion degradation protein 1, at 403238 to 404908 15275

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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396,200 + 15272 mRNA_6904 0.60 0.7
396,305 + 15272 mRNA_6904 0.66 -1.2
396,411 + 15272 mRNA_6904 0.72 -0.6
396,436 + 15272 mRNA_6904 0.74 0.8
396,855 - 2.2
396,893 - -1.4
396,903 - -0.5
396,910 + 1.1
396,917 + 0.3
396,921 - 0.1
396,928 + 0.5
396,943 - 0.3
397,050 - -0.6
397,082 + 0.4
397,203 + 1.6
397,223 + 0.3
397,773 - 15273 mRNA_6905 0.13 1.1
400,739 - 15273 mRNA_6905 0.70 2.3
400,739 + 15273 mRNA_6905 0.70 1.8
400,742 - 15273 mRNA_6905 0.70 1.2
402,072 - 0.8
402,358 - 2.4
402,364 - 0.4
402,370 - -0.1
402,370 + -0.9
402,378 - -2.7
402,394 + -0.7
402,530 + -0.3
402,648 - 0.6
402,784 - 15274 mRNA_6906 0.31 1.1
403,075 - -1.7
403,260 - 0.0
403,260 - 0.9