Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6880

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6879: 15247 - KOG0293 WD40 repeat-containing protein, at 339326 to 341674 15247 mRNA_6880: 15248 - K00641 metX homoserine O-acetyltransferase, at 342593 to 344205 15248 mRNA_6881: 15249 - Hypothetical Protein, at 344637 to 347114 15249

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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341,596 + 1.8
341,607 - 0.5
341,730 - 0.4
341,741 + 1.1
341,752 - -1.0
341,756 + 1.3
341,904 + -0.9
342,053 + 1.7
342,058 + -0.1
342,188 - 0.6
342,188 - 1.1
342,195 + 1.1
342,198 - -1.7
342,211 + 1.0
342,233 + -0.1
342,347 + 1.6
342,347 + 0.1
342,357 - 0.1
342,361 - 0.1
342,371 + 1.4
342,508 - 0.9
342,533 + 1.7
342,636 - 1.4
342,660 + 1.1
342,786 + 15248 mRNA_6880 0.12 3.4
343,237 - 15248 mRNA_6880 0.40 -0.8
343,385 + 15248 mRNA_6880 0.49 1.9
343,753 + 15248 mRNA_6880 0.72 0.5
343,801 - 15248 mRNA_6880 0.75 2.3
343,821 - 15248 mRNA_6880 0.76 -1.5
343,982 - 15248 mRNA_6880 0.86 0.0
344,024 - 15248 mRNA_6880 0.89 0.7
344,110 - 0.7
344,127 - -0.5
344,129 - 1.7
344,141 + 0.2
344,314 + 0.0
344,422 + -0.8
344,423 + 0.3
344,428 + 3.1
344,430 + 0.9
344,453 - -0.1
344,462 + 2.6
344,463 - -0.2
344,470 + -0.0
344,475 + -0.8
344,546 - 0.1
344,551 + 1.2
344,585 + 0.3
344,585 + 1.2
344,587 + 1.2
344,587 + 2.5
344,615 - 2.4
344,713 + 0.3
344,726 + -0.6
345,068 + 15249 mRNA_6881 0.17 0.3
345,145 - 15249 mRNA_6881 0.21 0.6
345,178 + 15249 mRNA_6881 0.22 0.3
345,198 + 15249 mRNA_6881 0.23 -0.3
345,199 + 15249 mRNA_6881 0.23 -0.1