Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6875

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6874: 15242 - BLAST similar to An13g00570 [Aspergillus niger], at 328504 to 329604 15242 mRNA_6875: 15243 - K10563 mutM, fpg formamidopyrimidine-DNA glycosylase, at 329876 to 331485 15243 mRNA_6876: 15244 - Hypothetical Protein, at 331964 to 333369 15244

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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328,919 + 15242 mRNA_6874 0.38 -1.5
329,097 + 15242 mRNA_6874 0.54 0.6
329,233 + 15242 mRNA_6874 0.66 0.7
329,254 + 15242 mRNA_6874 0.68 1.5
329,394 + 15242 mRNA_6874 0.81 0.2
329,398 - 15242 mRNA_6874 0.81 0.3
329,809 - 0.6
329,825 + 0.6
330,073 + 15243 mRNA_6875 0.12 -0.4
330,251 + 15243 mRNA_6875 0.23 1.8
330,396 - 15243 mRNA_6875 0.32 1.6
330,527 - 15243 mRNA_6875 0.40 -2.0
330,624 + 15243 mRNA_6875 0.46 -1.8
330,807 - 15243 mRNA_6875 0.58 -0.1
331,264 - 15243 mRNA_6875 0.86 0.8
331,281 + 15243 mRNA_6875 0.87 1.0
331,410 + 2.3
331,415 - 0.5
331,554 - -0.5
331,689 - 1.5
331,705 - -0.1
331,846 + 0.1
331,863 - -3.4
331,877 - -1.0