Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6872

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319945 to 325501 15239 mRNA_6872: 15240 - KOG3035 Isoamyl acetate-hydrolyzing esterase, at 325677 to 326693 15240 mRNA_6873: 15241 - K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase, at 326924 to 328423 15241

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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324,705 + 15239 mRNA_6871 0.86 1.0
324,714 - 15239 mRNA_6871 0.86 3.0
324,714 + 15239 mRNA_6871 0.86 1.5
324,947 - -0.5
324,966 - 1.3
324,970 + -0.2
325,275 - 0.6
325,389 + -0.0
325,443 - 0.5
325,453 + -0.2
325,475 - 1.2
325,563 - 1.5
325,592 - 0.0
325,594 - 1.3
325,598 - 2.8
325,754 - 1.4
325,982 - 15240 mRNA_6872 0.30 -1.4
326,032 - 15240 mRNA_6872 0.35 1.2
326,483 - 15240 mRNA_6872 0.79 0.1
326,610 + 0.8
326,765 + 2.3
327,035 - 0.5
327,186 + 15241 mRNA_6873 0.17 2.3
327,204 - 15241 mRNA_6873 0.19 1.6
327,630 - 15241 mRNA_6873 0.47 -0.0
327,670 + 15241 mRNA_6873 0.50 1.3
327,673 - 15241 mRNA_6873 0.50 3.6