Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6871

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6870: 15238 - K08736 MSH3 DNA mismatch repair protein MSH3, at 315464 to 319765 15238 mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319945 to 325501 15239 mRNA_6872: 15240 - KOG3035 Isoamyl acetate-hydrolyzing esterase, at 325677 to 326693 15240

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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319,062 - 15238 mRNA_6870 0.84 0.6
319,068 + 15238 mRNA_6870 0.84 1.8
319,527 - -2.1
319,665 - 2.5
319,807 - 2.7
319,809 - -0.3
320,246 + 2.2
321,181 - 15239 mRNA_6871 0.22 1.1
321,351 - 15239 mRNA_6871 0.25 -0.1
321,727 - 15239 mRNA_6871 0.32 -0.1
321,898 + 15239 mRNA_6871 0.35 0.5
321,929 + 15239 mRNA_6871 0.36 -0.3
322,037 + 15239 mRNA_6871 0.38 -0.9
322,075 - 15239 mRNA_6871 0.38 0.8
322,384 + 15239 mRNA_6871 0.44 0.1
322,809 + 15239 mRNA_6871 0.52 3.0
323,000 - 15239 mRNA_6871 0.55 0.1
323,809 - 15239 mRNA_6871 0.70 0.5
323,862 + 15239 mRNA_6871 0.70 0.3
324,104 + 15239 mRNA_6871 0.75 -1.2
324,247 - 15239 mRNA_6871 0.77 0.3
324,562 + 15239 mRNA_6871 0.83 -3.2
324,705 + 15239 mRNA_6871 0.86 1.0
324,714 - 15239 mRNA_6871 0.86 3.0
324,714 + 15239 mRNA_6871 0.86 1.5
324,947 - -0.5
324,966 - 1.3
324,970 + -0.2
325,275 - 0.6
325,389 + -0.0
325,443 - 0.5
325,453 + -0.2
325,475 - 1.2
325,563 - 1.5
325,592 - 0.0
325,594 - 1.3
325,598 - 2.8
325,754 - 1.4
325,982 - 15240 mRNA_6872 0.30 -1.4
326,032 - 15240 mRNA_6872 0.35 1.2
326,483 - 15240 mRNA_6872 0.79 0.1