Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6861

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6860: 15228 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 299588 to 301362 15228 mRNA_6861: 15229 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 301646 to 303773 15229 mRNA_6862: 15230 - KOG0754 Mitochondrial oxodicarboxylate carrier protein, at 303833 to 305130 15230

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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300,988 - 15228 mRNA_6860 0.79 0.3
301,033 - 15228 mRNA_6860 0.81 1.0
301,269 + -0.3
301,297 + -1.1
301,412 + -0.0
301,422 + 3.6
301,428 - 0.3
301,545 - 2.1
301,547 + 2.4
301,556 + 0.2
301,569 - -2.3
301,570 - 1.8
301,571 - 2.3
301,583 - -1.0
301,716 + 0.2
301,719 + 0.4
301,862 + 15229 mRNA_6861 0.10 0.1
302,042 + 15229 mRNA_6861 0.19 -0.7
302,157 + 15229 mRNA_6861 0.24 -1.2
303,047 + 15229 mRNA_6861 0.66 -1.8
303,055 + 15229 mRNA_6861 0.66 1.0
303,140 + 15229 mRNA_6861 0.70 -1.2
303,179 - 15229 mRNA_6861 0.72 -0.1
303,632 + 1.8
303,758 - -1.3
303,761 - 0.5
303,811 - -0.0
304,083 - 15230 mRNA_6862 0.19 -0.7
304,498 + 15230 mRNA_6862 0.51 1.7
304,611 - 15230 mRNA_6862 0.60 -0.4
304,631 - 15230 mRNA_6862 0.61 -3.0
304,633 - 15230 mRNA_6862 0.62 0.7
304,635 + 15230 mRNA_6862 0.62 -0.3