Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6860

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6859: 15227 - K16794 PAFAH1B1, LIS1 platelet-activating factor acetylhydrolase IB subunit alpha, at 297202 to 298993 15227 mRNA_6860: 15228 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 299588 to 301362 15228 mRNA_6861: 15229 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 301646 to 303773 15229

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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299,073 + 0.6
299,190 - 0.6
299,389 - 1.8
299,395 - 0.0
299,395 + -0.5
299,458 + 0.9
299,516 - -0.2
299,629 - 1.8
299,642 + 1.0
299,657 - 1.4
299,657 - 2.7
299,660 - 1.2
299,661 + -0.1
299,665 + 0.5
299,667 + -0.5
299,667 + -0.9
299,674 - 0.4
299,674 - 2.2
299,675 + 0.7
299,687 + 3.4
299,691 + 1.7
299,697 - 2.7
299,714 + 0.2
299,985 - 15228 mRNA_6860 0.22 1.0
300,114 - 15228 mRNA_6860 0.30 1.3
300,124 + 15228 mRNA_6860 0.30 1.0
300,178 + 15228 mRNA_6860 0.33 0.8
300,556 + 15228 mRNA_6860 0.55 -0.1
300,988 - 15228 mRNA_6860 0.79 0.3
301,033 - 15228 mRNA_6860 0.81 1.0
301,269 + -0.3
301,297 + -1.1
301,412 + -0.0
301,422 + 3.6
301,428 - 0.3
301,545 - 2.1
301,547 + 2.4
301,556 + 0.2
301,569 - -2.3
301,570 - 1.8
301,571 - 2.3
301,583 - -1.0
301,716 + 0.2
301,719 + 0.4
301,862 + 15229 mRNA_6861 0.10 0.1
302,042 + 15229 mRNA_6861 0.19 -0.7
302,157 + 15229 mRNA_6861 0.24 -1.2