Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6840

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6839: 15207 - K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1, at 242700 to 245129 15207 mRNA_6840: 15208 - SUPERFAMILY--SSF81383, at 245238 to 247225 15208 mRNA_6841: 15209 - K14328 UPF3, RENT3 regulator of nonsense transcripts 3, at 247342 to 248930 15209

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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244,419 - 15207 mRNA_6839 0.71 -0.0
244,481 - 15207 mRNA_6839 0.73 -1.1
244,492 + 15207 mRNA_6839 0.74 1.4
244,504 + 15207 mRNA_6839 0.74 2.0
244,514 + 15207 mRNA_6839 0.75 -0.4
244,514 + 15207 mRNA_6839 0.75 0.8
244,518 + 15207 mRNA_6839 0.75 -0.4
244,550 - 15207 mRNA_6839 0.76 0.7
244,645 - 15207 mRNA_6839 0.80 0.6
244,804 + 15207 mRNA_6839 0.87 -0.1
244,822 + 15207 mRNA_6839 0.87 -0.3
244,904 - -0.8
245,060 + 1.2
245,105 + -0.9
245,364 - 3.4
245,434 - 1.1
245,778 + 15208 mRNA_6840 0.27 1.0
246,100 + 15208 mRNA_6840 0.43 1.1
246,138 + 15208 mRNA_6840 0.45 -0.2
246,156 + 15208 mRNA_6840 0.46 -0.3
246,252 - 15208 mRNA_6840 0.51 0.8
246,256 + 15208 mRNA_6840 0.51 0.3
246,500 - 15208 mRNA_6840 0.63 0.6
246,529 - 15208 mRNA_6840 0.65 0.0
246,529 + 15208 mRNA_6840 0.65 1.6
246,555 - 15208 mRNA_6840 0.66 -1.2
246,571 - 15208 mRNA_6840 0.67 1.2
246,699 - 15208 mRNA_6840 0.73 0.1
246,707 + 15208 mRNA_6840 0.74 -0.7
246,754 - 15208 mRNA_6840 0.76 1.2
246,754 - 15208 mRNA_6840 0.76 0.1
246,828 + 15208 mRNA_6840 0.80 3.0
246,828 + 15208 mRNA_6840 0.80 1.6
247,123 - -0.5
247,269 + 2.0
247,270 - 0.1
247,275 + 0.5
247,293 + 0.8