Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6832

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6830: 15198 - K07893 RAB6A Ras-related protein Rab-6A, at 227427 to 228724 15198 mRNA_6831: 15199 - HMMPfam-ATP synthase regulation protein NCA2-PF08637, at 229033 to 229533 15199 mRNA_6832: 15200 - K18158 NCA2 nuclear control of ATPase protein 2, at 229712 to 231545 15200 mRNA_6833: 15201 - HMMPfam-Outer mitochondrial membrane transport complex protein-PF10568,HMMPfam-Tom37 C-terminal domain-PF11801, at 231692 to 232700 15201

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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228,847 + -0.4
228,872 + -0.7
228,894 - -1.4
228,981 + 1.2
229,147 - 15199 mRNA_6831 0.23 -0.3
229,149 + 15199 mRNA_6831 0.23 2.5
229,150 - 15199 mRNA_6831 0.23 -2.0
229,457 - 15199 mRNA_6831 0.85 1.1
229,467 + 15199 mRNA_6831 0.87 0.9
229,467 + 15199 mRNA_6831 0.87 0.8
229,545 - -0.5
229,568 + 1.2
229,593 - -1.3
230,039 - 15200 mRNA_6832 0.18 2.1
230,325 + 15200 mRNA_6832 0.33 0.1
230,457 + 15200 mRNA_6832 0.41 -0.0
230,895 - 15200 mRNA_6832 0.65 -1.3
231,024 - 15200 mRNA_6832 0.72 1.4
231,058 - 15200 mRNA_6832 0.73 1.2
231,192 - 15200 mRNA_6832 0.81 0.2
231,238 + 15200 mRNA_6832 0.83 0.1
231,350 + 15200 mRNA_6832 0.89 0.4
231,471 + 1.2
231,471 - 0.5
231,499 - 1.8
231,515 + 1.6
231,622 - 0.3
231,632 + -0.2
231,659 + -0.1
231,674 + -1.3
231,775 - -0.9
231,783 - 3.2
231,792 + -1.4
231,795 + 15201 mRNA_6833 0.10 0.8
231,815 - 15201 mRNA_6833 0.12 1.3
231,815 + 15201 mRNA_6833 0.12 0.6
231,930 - 15201 mRNA_6833 0.24 0.2
231,931 - 15201 mRNA_6833 0.24 1.7
231,937 - 15201 mRNA_6833 0.24 0.5
231,955 + 15201 mRNA_6833 0.26 2.0
231,962 - 15201 mRNA_6833 0.27 0.3
232,047 + 15201 mRNA_6833 0.35 3.7
232,513 + 15201 mRNA_6833 0.81 1.0