Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6809

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6808: 15176 - K12856 PRPF8, PRP8 pre-mRNA-processing factor 8, at 182860 to 191504 15176 mRNA_6809: 15177 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 191872 to 193044 15177 mRNA_6810: 15178 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 193397 to 194230 15178

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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191,654 - 2.3
191,681 - -0.5
191,682 + -1.7
191,830 + 0.5
191,937 + -0.7
192,099 + 15177 mRNA_6809 0.19 0.3
192,107 - 15177 mRNA_6809 0.20 0.5
192,296 + 15177 mRNA_6809 0.36 1.5
192,536 + 15177 mRNA_6809 0.57 -0.1
192,686 - 15177 mRNA_6809 0.69 -0.6
192,690 - 15177 mRNA_6809 0.70 -1.2
192,964 + 1.5
192,992 + 0.2
193,102 - 1.6
193,578 + 15178 mRNA_6810 0.22 -0.9
193,584 + 15178 mRNA_6810 0.22 -0.4
193,713 + 15178 mRNA_6810 0.38 0.9
193,719 + 15178 mRNA_6810 0.39 -0.1
194,012 - 15178 mRNA_6810 0.74 -0.7