Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6801

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6800: 15168 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 165891 to 167581 15168 mRNA_6801: 15169 - K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1, at 168460 to 170274 15169 mRNA_6802: 15170 - Hypothetical Protein, at 170561 to 172312 15170

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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167,478 + 0.7
167,606 + 0.1
167,611 + -0.0
167,614 - 0.5
167,626 - -0.8
167,731 - 0.1
167,757 - -1.1
167,763 - 2.0
167,772 + 1.5
167,795 - 0.1
167,890 + 1.2
167,891 + 1.3
167,899 - -0.5
167,900 - 0.1
167,902 + 1.2
167,946 - -0.1
167,953 - -0.5
167,960 - -3.9
167,964 - -0.8
168,029 + -1.8
168,079 - 2.5
168,080 + 2.8
168,085 - 0.5
168,086 + 0.4
168,089 - 0.5
168,089 - 0.2
168,089 - -1.2
168,090 - 1.0
168,090 - -0.5
168,090 + -1.4
168,090 - -0.2
168,091 + -0.8
168,093 + 0.4
168,097 + 0.2
168,107 + 1.4
168,116 + 1.4
168,117 - 0.1
168,117 + 0.5
168,118 - 0.4
168,123 - 0.8
168,138 + 0.4
168,141 - 0.6
168,148 + 0.4
168,149 + 1.1
168,171 + 2.2
168,174 + 1.1
168,177 - -3.2
168,181 - 1.8
168,190 - 0.4
168,190 + 0.3
168,200 - 0.6
168,203 - 0.2
168,205 - 0.1
168,212 + -0.0
168,220 - 0.1
168,224 + 0.6
168,226 - 0.0
168,228 - 1.2
168,229 - 0.3
168,229 + 1.4
168,244 + 0.0
168,244 + 2.7
168,245 - 2.9
168,247 + -1.2
168,247 + -2.3
168,249 + -0.4
168,250 - -0.7
168,279 - 0.4
168,344 - 0.5
168,360 - -1.2
168,383 + 1.8
168,385 - 1.5
168,386 - 0.5
168,505 - 1.6
168,532 - -0.2
168,542 - 0.7
168,702 + 15169 mRNA_6801 0.13 0.4
168,705 + 15169 mRNA_6801 0.13 -0.3
168,833 + 15169 mRNA_6801 0.21 0.6
168,837 - 15169 mRNA_6801 0.21 1.2
168,837 + 15169 mRNA_6801 0.21 1.7
169,101 - 15169 mRNA_6801 0.35 2.0
169,264 + 15169 mRNA_6801 0.44 0.2
169,418 + 15169 mRNA_6801 0.53 -0.1
169,661 + 15169 mRNA_6801 0.66 -0.7
169,662 - 15169 mRNA_6801 0.66 2.2
169,965 - 15169 mRNA_6801 0.83 0.6
170,115 - -0.1
170,278 - -0.3
170,279 - -0.1
170,356 - 1.3
170,383 - -0.8
170,388 + 0.3
170,402 - 1.7
170,407 - 2.1
170,410 + 0.1
170,438 - 0.3
170,444 - -0.1
170,444 + -0.1
170,445 - 0.9
170,445 + 0.9
170,446 - 0.3
170,447 + 1.4
170,449 + -0.4
170,453 + -0.4
170,453 + 2.2
170,454 + 0.3
170,460 - 2.8
170,460 + 0.7
170,470 - -0.3
170,479 + -0.1
170,489 + 2.1
170,591 - 0.2
170,603 + 1.5
170,607 - 0.2
170,612 - -0.8
170,618 + -0.1
170,635 + 0.2
170,646 + 0.4
170,655 + -0.0
170,765 - 15170 mRNA_6802 0.12 1.9
170,778 - 15170 mRNA_6802 0.12 1.4
170,783 + 15170 mRNA_6802 0.13 1.2
170,806 - 15170 mRNA_6802 0.14 0.0
170,810 + 15170 mRNA_6802 0.14 1.0
170,961 - 15170 mRNA_6802 0.23 1.0
171,223 + 15170 mRNA_6802 0.38 -0.9