Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6800

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6799: 15167 - K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase, at 163328 to 165722 15167 mRNA_6800: 15168 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 165891 to 167581 15168 mRNA_6801: 15169 - K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1, at 168460 to 170274 15169

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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165,778 + 1.1
165,791 - 2.8
165,791 - -1.6
165,812 - 1.8
165,824 - 0.4
165,825 - 0.2
165,825 - 1.1
165,828 + 0.5
165,910 - -1.3
166,306 + 15168 mRNA_6800 0.25 0.1
166,574 - 15168 mRNA_6800 0.40 0.3
166,583 + 15168 mRNA_6800 0.41 -0.0
166,857 - 15168 mRNA_6800 0.57 1.5
167,003 - 15168 mRNA_6800 0.66 -2.4
167,045 - 15168 mRNA_6800 0.68 -0.9
167,050 + 15168 mRNA_6800 0.69 -2.4
167,231 + 15168 mRNA_6800 0.79 -1.1
167,304 - 15168 mRNA_6800 0.84 0.2
167,305 + 15168 mRNA_6800 0.84 0.3
167,315 + 15168 mRNA_6800 0.84 -0.1
167,339 + 15168 mRNA_6800 0.86 0.2
167,478 + 0.7
167,606 + 0.1
167,611 + -0.0
167,614 - 0.5
167,626 - -0.8
167,731 - 0.1
167,757 - -1.1
167,763 - 2.0
167,772 + 1.5
167,795 - 0.1
167,890 + 1.2
167,891 + 1.3
167,899 - -0.5
167,900 - 0.1
167,902 + 1.2
167,946 - -0.1
167,953 - -0.5
167,960 - -3.9
167,964 - -0.8
168,029 + -1.8
168,079 - 2.5
168,080 + 2.8
168,085 - 0.5
168,086 + 0.4
168,089 - 0.5
168,089 - 0.2
168,089 - -1.2
168,090 - 1.0
168,090 - -0.5
168,090 + -1.4
168,090 - -0.2
168,091 + -0.8
168,093 + 0.4
168,097 + 0.2
168,107 + 1.4
168,116 + 1.4
168,117 - 0.1
168,117 + 0.5
168,118 - 0.4
168,123 - 0.8
168,138 + 0.4
168,141 - 0.6
168,148 + 0.4
168,149 + 1.1
168,171 + 2.2
168,174 + 1.1
168,177 - -3.2
168,181 - 1.8
168,190 - 0.4
168,190 + 0.3
168,200 - 0.6
168,203 - 0.2
168,205 - 0.1
168,212 + -0.0
168,220 - 0.1
168,224 + 0.6
168,226 - 0.0
168,228 - 1.2
168,229 - 0.3
168,229 + 1.4
168,244 + 0.0
168,244 + 2.7
168,245 - 2.9
168,247 + -1.2
168,247 + -2.3
168,249 + -0.4
168,250 - -0.7
168,279 - 0.4
168,344 - 0.5
168,360 - -1.2
168,383 + 1.8
168,385 - 1.5
168,386 - 0.5
168,505 - 1.6
168,532 - -0.2
168,542 - 0.7