Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6796

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6795: 15163 - KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1, at 150190 to 154769 15163 mRNA_6796: 15164 - Hypothetical Protein, at 155550 to 156068 15164 mRNA_6797: 15165 - BLAST Formin-like protein 3 [Rhizoctonia solani], at 156306 to 160746 15165

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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154,586 + 1.8
154,713 - 0.1
154,732 + 1.3
154,914 + 0.8
155,147 + -0.2
155,166 + -0.2
155,186 + -0.5
155,298 + 1.5
155,324 - -1.7
155,337 + 0.6
155,446 + 0.4
155,462 - 1.1
155,481 + 1.7
155,498 + 1.1
155,626 - 15164 mRNA_6796 0.15 -0.5
155,632 - 15164 mRNA_6796 0.16 1.4
155,646 - 15164 mRNA_6796 0.18 -1.2
155,651 + 15164 mRNA_6796 0.19 0.7
155,708 - 15164 mRNA_6796 0.30 -1.1
155,754 - 15164 mRNA_6796 0.39 -0.7
155,771 - 15164 mRNA_6796 0.43 -0.0
155,773 + 15164 mRNA_6796 0.43 0.3
155,774 - 15164 mRNA_6796 0.43 1.5
155,778 - 15164 mRNA_6796 0.44 -0.6
155,784 + 15164 mRNA_6796 0.45 -1.4
155,795 + 15164 mRNA_6796 0.47 0.5
155,795 + 15164 mRNA_6796 0.47 2.3
155,799 + 15164 mRNA_6796 0.48 1.3
155,809 + 15164 mRNA_6796 0.50 1.8
155,811 + 15164 mRNA_6796 0.50 0.7
155,822 - 15164 mRNA_6796 0.52 2.0
155,916 - 15164 mRNA_6796 0.71 -3.7
155,938 - 15164 mRNA_6796 0.75 -1.3
155,943 - 15164 mRNA_6796 0.76 0.2
155,953 - 15164 mRNA_6796 0.78 -0.0
155,963 + 15164 mRNA_6796 0.80 0.5
156,099 - -0.9
156,108 + 1.2
156,117 - -1.1
156,410 + 0.1
156,498 - -0.3
156,519 - -0.9
156,679 - 1.6
156,679 - 0.7
156,918 + 15165 mRNA_6797 0.14 0.9
156,919 - 15165 mRNA_6797 0.14 1.9
156,921 + 15165 mRNA_6797 0.14 1.7