Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6768

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6767: 15135 - KOG0393 Ras-related small GTPase, Rho type, at 89121 to 90132 15135 mRNA_6768: 15136 - HMMPfam-DNA repair protein endonuclease SAE2/CtIP C-terminus-PF08573, at 90313 to 94205 15136 mRNA_6769: 15137 - K01953 asnB, ASNS asparagine synthase (glutamine-hydrolysing), at 94516 to 96583 15137

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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90,222 + 0.3
90,236 - -3.0
90,249 + 0.3
90,251 + -0.5
90,389 - 0.1
90,401 + 0.5
90,550 + 2.4
90,963 + 15136 mRNA_6768 0.17 -2.2
91,477 + 15136 mRNA_6768 0.30 0.3
91,756 - 15136 mRNA_6768 0.37 -2.3
91,857 - 15136 mRNA_6768 0.40 0.5
93,664 - 15136 mRNA_6768 0.86 -1.1
94,112 + -0.4
94,199 + -1.4
94,203 - 0.6
94,211 + 1.1
94,526 - -0.9
94,992 + 15137 mRNA_6769 0.23 0.1