Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6737

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6736: 15104 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 26533 to 28608 15104 mRNA_6737: 15105 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 29328 to 32887 15105 mRNA_6738: 15106 - Hypothetical Protein, at 32978 to 33241 15106 mRNA_6739: 15107 - BLAST polysaccharide lyase family 14 protein [Mixia osm..., at 33495 to 35587 15107

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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28,374 - 15104 mRNA_6736 0.89 0.2
28,500 - 0.2
28,653 - 0.8
28,712 - 0.3
28,946 + 1.0
28,970 + 0.1
28,990 + 1.2
29,115 - -2.0
29,121 - 0.4
29,124 + 0.3
29,269 + -1.7
29,399 - 0.8
29,449 + 1.9
29,540 - 1.9
29,550 - 0.6
29,585 - 0.6
29,606 + -0.1
29,690 - 15105 mRNA_6737 0.10 0.9
29,699 + 15105 mRNA_6737 0.10 -1.2
29,746 + 15105 mRNA_6737 0.12 -1.5
29,836 + 15105 mRNA_6737 0.14 0.4
30,011 + 15105 mRNA_6737 0.19 1.2
30,136 + 15105 mRNA_6737 0.23 0.3
30,288 - 15105 mRNA_6737 0.27 0.5
30,417 + 15105 mRNA_6737 0.31 1.0
30,446 + 15105 mRNA_6737 0.31 1.1
30,845 - 15105 mRNA_6737 0.43 -0.2
31,158 - 15105 mRNA_6737 0.51 0.5
31,310 - 15105 mRNA_6737 0.56 2.5
31,481 - 15105 mRNA_6737 0.60 0.6
31,607 - 15105 mRNA_6737 0.64 0.1
31,686 - 15105 mRNA_6737 0.66 3.9
31,725 + 15105 mRNA_6737 0.67 0.1
31,881 + 15105 mRNA_6737 0.72 0.7
31,986 - 15105 mRNA_6737 0.75 1.8
32,059 - 15105 mRNA_6737 0.77 0.5
32,076 + 15105 mRNA_6737 0.77 1.4
32,236 + 15105 mRNA_6737 0.82 0.5
32,282 + 15105 mRNA_6737 0.83 2.8
32,507 - 15105 mRNA_6737 0.89 -0.3
32,608 + -3.4
32,639 + 1.2
32,639 + 1.9
32,642 - 1.5
32,642 - -0.1
32,677 - 0.1
32,687 + -3.1
32,687 + 0.5
32,737 - 2.0
32,738 + 0.0
32,777 + 2.2
32,839 - 0.7
33,105 - 15106 mRNA_6738 0.48 1.8
33,228 - 0.6
33,402 + 1.6
33,536 - 1.2
33,559 - 0.1