Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6728

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6727: 15095 - K00761 upp, UPRT uracil phosphoribosyltransferase, at 3595 to 4704 15095 mRNA_6728: 15096 - K14309 NUP93, NIC96 nuclear pore complex protein Nup93, at 5048 to 8579 15096 mRNA_6729: 15097 - HMMPfam-Putative GTPase activating protein for Arf-PF01412,PRINTS-HIV Rev interacting protein signature-PR00405,ProSiteProfiles-ARF GTPase-activating proteins domain profile.-PS50115,SMART-Putative GTP-ase activating proteins for the small GTPase, ARF-SM00105,SUPERFAMILY--SSF57863, at 8871 to 11490 15097

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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4,612 - 1.0
4,639 + 1.6
4,774 - 0.7
4,889 - 0.1
4,914 + 0.4
4,918 - 0.5
4,980 - 1.7
5,104 + -0.6
5,529 - 15096 mRNA_6728 0.14 0.8
6,118 - 15096 mRNA_6728 0.30 1.7
6,283 - 15096 mRNA_6728 0.35 0.6
8,663 - 0.7
9,084 - 1.6
9,541 - 15097 mRNA_6729 0.26 -0.5