Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6674

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6673: 15041 - Hypothetical Protein, at 1416296 to 1417315 15041 mRNA_6674: 15042 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 1418030 to 1419199 15042 mRNA_6675: 15043 - Hypothetical Protein, at 1419227 to 1419845 15043 mRNA_6676: 15044 - KOG3138 Predicted N-acetyltransferase, at 1419972 to 1420806 15044

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,417,048 + 15041 mRNA_6673 0.74 1.2
1,417,048 + 15041 mRNA_6673 0.74 -0.4
1,417,086 - 15041 mRNA_6673 0.77 1.8
1,417,226 + 0.3
1,417,233 - -2.5
1,417,234 - -0.0
1,417,235 - -2.1
1,417,361 - 2.7
1,417,363 - -0.4
1,417,377 + -0.1
1,417,380 - -0.8
1,417,381 + -0.6
1,417,383 + 0.3
1,417,389 - -0.4
1,417,389 + 0.3
1,417,409 - 0.3
1,417,495 - 0.6
1,417,506 - 1.4
1,417,510 + -1.3
1,417,514 + -0.2
1,417,534 - 3.4
1,417,543 - -3.2
1,417,549 + 1.4
1,417,552 - 2.1
1,417,555 + 1.3
1,417,566 + -0.9
1,417,603 - -0.1
1,417,604 - -0.4
1,417,619 + 0.8
1,417,625 - 1.6
1,417,625 - -0.2
1,417,642 + 2.1
1,417,652 + 0.8
1,417,661 + -1.5
1,417,698 - 0.5
1,417,700 - 0.3
1,417,717 - -0.1
1,417,723 + 0.1
1,417,728 + 1.9
1,417,729 - -0.5
1,417,734 + 1.2
1,417,766 + 0.1
1,417,769 + 0.6
1,417,777 - 1.0
1,417,784 - 0.5
1,417,828 + -0.5
1,417,853 + 0.4
1,417,857 - 0.2
1,417,859 - -0.2
1,417,896 + 2.3
1,417,900 - 3.1
1,418,019 + -1.2
1,418,024 - 1.0
1,418,053 - 0.1
1,418,340 - 15042 mRNA_6674 0.26 1.4
1,418,464 - 15042 mRNA_6674 0.37 2.4
1,418,492 - 15042 mRNA_6674 0.39 -0.0
1,418,643 + 15042 mRNA_6674 0.52 1.4
1,418,769 + 15042 mRNA_6674 0.63 0.3
1,418,936 - 15042 mRNA_6674 0.77 0.9
1,419,219 + 0.1
1,419,340 - 15043 mRNA_6675 0.18 1.9
1,419,488 - 15043 mRNA_6675 0.42 -1.1
1,419,507 + 15043 mRNA_6675 0.45 0.9
1,419,527 - 15043 mRNA_6675 0.48 0.1
1,419,628 + 15043 mRNA_6675 0.65 -0.4
1,419,629 + 15043 mRNA_6675 0.65 0.0
1,419,636 + 15043 mRNA_6675 0.66 0.5
1,419,646 + 15043 mRNA_6675 0.68 -0.2
1,419,647 + 15043 mRNA_6675 0.68 -0.7
1,419,648 + 15043 mRNA_6675 0.68 0.5
1,419,654 - 15043 mRNA_6675 0.69 -0.1
1,419,659 + 15043 mRNA_6675 0.70 -0.2
1,419,670 + 15043 mRNA_6675 0.72 0.1
1,419,778 - 15043 mRNA_6675 0.89 -0.2
1,419,780 + 15043 mRNA_6675 0.89 -3.1
1,419,811 + 0.8
1,419,811 + -1.2
1,419,827 - 1.3
1,419,880 + -0.5
1,419,938 - 0.0
1,419,950 - -0.5
1,419,975 - 0.5
1,419,976 + -0.2
1,419,991 - -0.8
1,420,118 + 15044 mRNA_6676 0.17 0.3
1,420,122 + 15044 mRNA_6676 0.18 0.2