Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6657

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6657: 15025 - K16302 CNNM metal transporter CNNM, at 1363504 to 1366738 15025 mRNA_6658: 15026 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1366899 to 1370407 15026

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,362,725 + 1.0
1,362,726 + 0.2
1,362,855 + 1.0
1,362,865 - -0.7
1,362,870 + -2.4
1,362,884 + -0.2
1,363,016 + 0.4
1,363,019 - 1.1
1,363,038 + 2.6
1,363,044 - 3.9
1,363,048 + 1.6
1,363,049 - 0.1
1,363,062 - 1.4
1,363,175 + -1.1
1,363,182 - 0.6
1,363,184 - 0.2
1,363,187 + 2.3
1,363,190 - 0.7
1,363,191 + -1.2
1,363,211 + -0.3
1,363,324 - 1.3
1,363,331 - 0.2
1,363,346 + 1.5
1,363,353 + 3.2
1,363,357 - 0.5
1,363,374 + -0.3
1,363,429 - 2.4
1,363,445 - -0.5
1,363,446 - -0.3
1,363,446 + 0.1
1,363,583 - 0.5
1,364,173 - 15025 mRNA_6657 0.21 -1.5
1,364,256 - 15025 mRNA_6657 0.23 -0.0
1,364,285 - 15025 mRNA_6657 0.24 -0.2
1,364,733 + 15025 mRNA_6657 0.38 0.5
1,364,743 + 15025 mRNA_6657 0.38 1.4
1,365,014 + 15025 mRNA_6657 0.47 0.5
1,365,152 - 15025 mRNA_6657 0.51 2.7
1,365,178 + 15025 mRNA_6657 0.52 0.4
1,365,335 - 15025 mRNA_6657 0.57 -0.2
1,365,587 + 15025 mRNA_6657 0.64 -0.8
1,365,613 - 15025 mRNA_6657 0.65 1.4
1,365,615 + 15025 mRNA_6657 0.65 1.6
1,365,621 + 15025 mRNA_6657 0.65 -1.7
1,365,767 + 15025 mRNA_6657 0.70 -0.7
1,365,906 - 15025 mRNA_6657 0.74 0.1
1,366,210 + 15025 mRNA_6657 0.84 0.5
1,366,353 + 15025 mRNA_6657 0.88 0.7
1,366,361 - 15025 mRNA_6657 0.88 -0.4
1,366,385 + 15025 mRNA_6657 0.89 0.6
1,366,387 - 15025 mRNA_6657 0.89 -1.0
1,366,493 - -1.1
1,366,518 + 0.0
1,366,657 - -2.1
1,366,659 + -0.7
1,366,665 - -0.4
1,366,671 + -0.3
1,366,676 + -0.3
1,366,791 - 0.3
1,366,791 - 2.6
1,366,791 - 0.1
1,366,791 - 0.5
1,366,793 - -0.3
1,366,809 + 0.5
1,366,819 + -0.5
1,366,821 - 0.4
1,366,822 + 1.1
1,366,826 + -0.2
1,366,835 + 0.1
1,366,836 - 1.2
1,366,838 + -0.2
1,366,841 + 0.6
1,366,849 + 0.2
1,366,861 + 0.3
1,366,871 - 0.2
1,366,874 + 0.6
1,366,933 - 0.8
1,366,935 + 2.6
1,367,107 - 0.0
1,367,108 + -0.6
1,367,121 - 1.4
1,367,146 + 0.1
1,367,213 - -1.4
1,367,263 + 15026 mRNA_6658 0.10 0.1
1,367,269 - 15026 mRNA_6658 0.11 0.9
1,367,409 - 15026 mRNA_6658 0.15 0.6