Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6644

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6643: 15011 - KOG2983 Uncharacterized conserved protein, at 1330275 to 1331625 15011 mRNA_6644: 15012 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 1332034 to 1334144 15012

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,331,731 - 3.1
1,331,741 + 0.5
1,331,744 + 0.0
1,331,752 + 0.8
1,331,780 + -1.5
1,331,919 + 0.2
1,331,920 - -0.1
1,331,924 - -1.3
1,331,934 - 0.6
1,331,940 + -1.4
1,331,940 + -0.1
1,331,942 + 0.5
1,331,954 - -1.0
1,331,961 - 1.5
1,331,965 - 0.6
1,331,965 - 1.1
1,331,966 - 0.4
1,331,967 + 1.4
1,332,093 + -0.1
1,332,128 + 1.2
1,332,242 + 1.3
1,332,279 - 15012 mRNA_6644 0.12 -0.9
1,332,290 - 15012 mRNA_6644 0.12 1.0
1,332,384 - 15012 mRNA_6644 0.17 -0.1
1,332,411 - 15012 mRNA_6644 0.18 0.1
1,332,583 + 15012 mRNA_6644 0.26 -0.5
1,333,261 - 15012 mRNA_6644 0.58 -0.0
1,333,543 - 15012 mRNA_6644 0.71 0.9
1,333,612 + 15012 mRNA_6644 0.75 1.7
1,333,748 - 15012 mRNA_6644 0.81 -0.1
1,334,034 - 0.1
1,334,140 - 2.8
1,334,294 - 0.1
1,334,324 - -0.6
1,334,356 + 2.2
1,334,369 + -0.0
1,334,392 + 2.7
1,334,435 + 2.4
1,334,438 - 1.5
1,334,447 - -0.3
1,334,464 + 1.3
1,334,464 + 0.2
1,334,467 - 0.2
1,334,495 - 1.0
1,334,496 - -0.3
1,334,499 - 3.6
1,334,503 + 3.8
1,334,508 - 0.0
1,334,510 - 2.6
1,334,516 + 0.5
1,334,523 - 1.6
1,334,527 - 2.2
1,334,529 - 0.3
1,334,529 + 0.5
1,334,544 + -0.3
1,334,552 + 0.2
1,334,553 + 1.1
1,334,556 - -1.2
1,334,573 - 1.0
1,334,574 + 0.2
1,334,574 + 0.9
1,334,579 - 1.1
1,334,585 - 0.3
1,334,588 + -0.0
1,334,590 - 3.2
1,334,592 + -0.2
1,334,593 - 1.4
1,334,612 + -0.6
1,334,614 - -0.8
1,334,615 - -0.9
1,334,623 + 1.1
1,334,623 - 1.2
1,334,654 - 0.3
1,334,655 - 1.4
1,334,672 - 1.2
1,334,676 - -1.2
1,334,681 - -0.2
1,334,687 - 0.4
1,334,690 - 0.3
1,334,691 + 0.3
1,334,700 + 1.1
1,334,701 - 2.0
1,334,702 + 1.5
1,334,712 - 0.3
1,334,712 - 1.0
1,334,714 - -1.0
1,334,726 - -0.8
1,334,731 - -1.0
1,334,757 - 0.1
1,334,760 - 0.5
1,334,764 + -1.0
1,334,773 + 0.2
1,334,784 + -1.9
1,334,792 + 0.3
1,334,820 + -1.3
1,334,822 - -1.6
1,334,827 + 2.9
1,334,838 + 0.5
1,334,856 - 0.4
1,334,875 + -0.4
1,334,882 - -1.6
1,334,885 - 1.1
1,334,898 - -0.2
1,334,915 - 0.7
1,334,915 + -0.3
1,334,920 + 0.3
1,334,924 + 0.6
1,334,932 - 0.3
1,334,959 - 2.0
1,334,961 + -0.1
1,334,974 - 2.4
1,334,975 - 2.4
1,334,976 + -0.9
1,334,976 - -0.1
1,334,981 - 0.0
1,334,989 - -1.9
1,334,993 - 2.8
1,334,996 + 0.7
1,334,996 + 2.4
1,335,007 + -1.8
1,335,008 - -0.2
1,335,012 + -0.3
1,335,014 + -0.1
1,335,015 + -0.5
1,335,018 + 0.3
1,335,019 - 0.8
1,335,026 + -0.7
1,335,030 + -1.3
1,335,030 - 1.4
1,335,033 + 0.2
1,335,036 + 0.4
1,335,047 - -0.4
1,335,066 + -1.5
1,335,103 + 0.4
1,335,103 + -0.5
1,335,107 + 2.9
1,335,114 + 0.5
1,335,114 + 0.2
1,335,114 + -0.6
1,335,119 - 2.1
1,335,127 - -0.1
1,335,134 - 1.5