Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6528

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6526: 14894 - KOG2929 Transcription factor, component of CCR4 transcriptional complex, at 1004889 to 1006380 14894 mRNA_6527: 14895 - K18178 COA5, PET191 cytochrome c oxidase assembly factor 5, at 1006595 to 1007064 14895 mRNA_6528: 14896 - K01514 PRUNE, PPX1 exopolyphosphatase, at 1007263 to 1008621 14896 mRNA_6529: 14897 - K03626 EGD2, NACA nascent polypeptide-associated complex subunit alpha, at 1008919 to 1009693 14897

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,006,424 - 0.6
1,006,427 + 2.2
1,006,432 + -0.2
1,006,610 + -0.8
1,007,067 - 3.3
1,007,604 + 14896 mRNA_6528 0.25 -1.2
1,007,617 - 14896 mRNA_6528 0.26 -1.0
1,007,890 - 14896 mRNA_6528 0.46 0.8
1,007,928 + 14896 mRNA_6528 0.49 -0.8
1,008,165 - 14896 mRNA_6528 0.66 -0.6
1,008,630 - -0.5
1,008,876 - 0.1
1,008,979 + -0.7
1,009,000 - 14897 mRNA_6529 0.10 0.4
1,009,021 - 14897 mRNA_6529 0.13 0.8
1,009,146 + 14897 mRNA_6529 0.29 0.2
1,009,197 - 14897 mRNA_6529 0.36 0.9
1,009,207 - 14897 mRNA_6529 0.37 0.0
1,009,304 - 14897 mRNA_6529 0.50 -0.5
1,009,438 - 14897 mRNA_6529 0.67 -0.0
1,009,450 - 14897 mRNA_6529 0.69 0.1