Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6514

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6513: 14881 - HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672, at 964907 to 967353 14881 mRNA_6514: 14882 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 968322 to 969938 14882 mRNA_6515: 14883 - K16578 CLASP1_2 CLIP-associating protein 1/2, at 970088 to 973817 14883

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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967,376 - -0.1
967,386 + 0.3
967,391 - 1.4
967,400 - 0.2
967,415 - 1.4
967,534 - 1.0
967,544 - 0.1
967,544 - 2.7
967,546 - -1.5
967,558 - -0.3
967,569 - -0.4
967,602 + 1.8
967,700 + 0.5
967,705 + 1.0
967,712 - 0.3
967,839 + 0.5
967,979 - 1.9
968,019 + -0.1
968,125 + 0.1
968,270 - -0.1
968,278 - 0.9
968,280 + 0.9
968,421 - 0.4
968,453 + -1.3
968,700 - 14882 mRNA_6514 0.23 1.4
968,912 - 14882 mRNA_6514 0.36 -1.3
968,924 - 14882 mRNA_6514 0.37 2.3
969,313 + 14882 mRNA_6514 0.61 1.4
969,484 - 14882 mRNA_6514 0.72 0.3
969,658 + 14882 mRNA_6514 0.83 0.3
969,767 + 14882 mRNA_6514 0.89 2.5
969,780 + 1.1
970,112 + -1.8
970,376 - 0.5
970,829 + 14883 mRNA_6515 0.20 -0.0