Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6491

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6490: 14858 - KOG1698 Mitochondrial/chloroplast ribosomal protein L19, at 911663 to 912456 14858 mRNA_6491: 14859 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 912748 to 918213 14859 mRNA_6492: 14860 - KOG3269 Predicted membrane protein, at 918835 to 919868 14860

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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912,405 + -0.0
912,748 - -1.5
912,750 + -0.2
912,759 + -0.2
912,890 + 0.6
913,187 - 0.2
913,188 + -0.7
913,344 - 14859 mRNA_6491 0.11 1.3
913,357 - 14859 mRNA_6491 0.11 0.1
913,454 + 14859 mRNA_6491 0.13 0.2
913,598 + 14859 mRNA_6491 0.16 0.8
913,720 + 14859 mRNA_6491 0.18 -0.4
913,758 - 14859 mRNA_6491 0.18 0.3
913,911 + 14859 mRNA_6491 0.21 -1.0
913,924 - 14859 mRNA_6491 0.22 0.0
913,928 + 14859 mRNA_6491 0.22 2.2
913,944 + 14859 mRNA_6491 0.22 0.2
914,148 + 14859 mRNA_6491 0.26 1.4
914,379 + 14859 mRNA_6491 0.30 0.1
914,447 + 14859 mRNA_6491 0.31 0.7
914,489 + 14859 mRNA_6491 0.32 0.1
914,854 + 14859 mRNA_6491 0.39 2.5
915,176 - 14859 mRNA_6491 0.44 2.8
915,321 + 14859 mRNA_6491 0.47 -2.5
915,411 - 14859 mRNA_6491 0.49 0.1
915,423 - 14859 mRNA_6491 0.49 -0.7
915,684 + 14859 mRNA_6491 0.54 3.4
916,221 + 14859 mRNA_6491 0.64 -1.0
916,360 - 14859 mRNA_6491 0.66 -0.2
916,509 - 14859 mRNA_6491 0.69 0.2
916,561 + 14859 mRNA_6491 0.70 2.4
916,763 - 14859 mRNA_6491 0.73 0.6
916,804 + 14859 mRNA_6491 0.74 0.1
917,070 - 14859 mRNA_6491 0.79 0.8
917,112 - 14859 mRNA_6491 0.80 -2.3
917,538 - 14859 mRNA_6491 0.88 -1.1
917,550 + 14859 mRNA_6491 0.88 0.8
918,114 - 2.6
918,383 - 3.2
918,390 + -0.1
918,419 + 2.4
918,420 + -0.9
918,439 - 0.4
918,439 + 1.0
918,582 - 0.5
918,583 - 0.1
918,586 + 0.3
919,005 - 14860 mRNA_6492 0.16 0.6
919,023 + 14860 mRNA_6492 0.18 1.5