Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6489

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6488: 14856 - K01655 LYS21, LYS20 homocitrate synthase, at 905172 to 907549 14856 mRNA_6489: 14857 - KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases, at 907944 to 911303 14857 mRNA_6490: 14858 - KOG1698 Mitochondrial/chloroplast ribosomal protein L19, at 911663 to 912456 14858

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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907,277 - 14856 mRNA_6488 0.89 0.7
907,654 + 0.9
907,770 + 0.2
907,797 - 0.7
907,831 + 2.4
907,895 - 0.7
908,062 - -0.3
908,078 + 0.1
908,123 - -0.3
908,235 - 0.2
908,378 + 14857 mRNA_6489 0.13 1.7
908,770 - 14857 mRNA_6489 0.25 0.3
908,897 - 14857 mRNA_6489 0.28 0.8
909,029 + 14857 mRNA_6489 0.32 0.2
909,061 + 14857 mRNA_6489 0.33 0.6
909,124 + 14857 mRNA_6489 0.35 -1.4
909,247 - 14857 mRNA_6489 0.39 0.3
909,327 - 14857 mRNA_6489 0.41 -0.8
909,966 + 14857 mRNA_6489 0.60 0.9
910,010 - 14857 mRNA_6489 0.61 0.3
910,022 + 14857 mRNA_6489 0.62 0.3
910,047 - 14857 mRNA_6489 0.63 0.4
910,115 - 14857 mRNA_6489 0.65 0.8
910,124 + 14857 mRNA_6489 0.65 1.0
910,251 - 14857 mRNA_6489 0.69 0.4
910,351 - 14857 mRNA_6489 0.72 1.0
910,824 + 14857 mRNA_6489 0.86 1.0
911,132 - 0.5
911,228 + -1.0
911,263 - 1.5
911,264 - -0.1
911,566 - 0.6
911,661 - -1.5