Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6486

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6485: 14853 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 898441 to 899753 14853 mRNA_6486: 14854 - K08294 MKK1_2 mitogen-activated protein kinase kinase, at 900253 to 901810 14854 mRNA_6487: 14855 - K11237 BEM1 bud emergence protein 1, at 902586 to 904816 14855

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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899,270 - 14853 mRNA_6485 0.63 0.1
899,426 - 14853 mRNA_6485 0.75 -1.2
899,852 - -1.2
899,875 + 0.3
899,900 - 1.9
899,902 - 0.3
900,013 - 0.0
900,039 - -0.5
900,194 - 2.9
900,200 + 0.6
900,213 - 0.2
900,320 + 0.8
900,480 - 14854 mRNA_6486 0.15 0.5
900,983 - 14854 mRNA_6486 0.47 -0.0
901,226 - 14854 mRNA_6486 0.62 0.4
901,588 + 14854 mRNA_6486 0.86 2.1
901,936 - 0.3
901,961 - 4.5
901,962 + 0.9
901,963 - 0.2
901,967 + 0.3
901,986 + 0.4
901,989 + 1.5
901,997 - 2.2
902,020 + 0.7
902,095 - -0.3
902,104 + 0.8
902,129 - 0.5
902,134 + -1.8
902,143 - 1.8
902,157 + 0.5
902,161 + -0.3
902,178 - 0.5
902,252 - 3.2
902,279 - -2.1
902,291 + -0.8
902,298 - -0.1
902,308 + 0.5
902,364 - -2.6
902,364 + 1.8
902,415 + 0.4
902,428 - 0.1
902,572 - 1.3
902,579 - -0.8
902,594 - 0.1
902,643 + 2.4