Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6467

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6466: 14834 - Hypothetical Protein, at 848394 to 849782 14834 mRNA_6467: 14835 - K20242 EVI5 ecotropic viral integration site 5 protein, at 850077 to 853413 14835 mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853896 to 857931 14836

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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849,270 - 14834 mRNA_6466 0.63 -0.2
849,282 - 14834 mRNA_6466 0.64 0.5
849,283 + 14834 mRNA_6466 0.64 -0.1
849,424 + 14834 mRNA_6466 0.74 0.5
849,550 - 14834 mRNA_6466 0.83 0.2
849,555 - 14834 mRNA_6466 0.84 1.8
849,687 + -0.0
849,694 - 0.7
849,715 + 0.1
849,723 + -0.1
849,832 - 1.4
849,860 - 1.7
849,871 - 1.1
849,877 - -0.3
849,988 + 0.5
849,989 - 2.4
849,999 - 1.3
849,999 - 1.4
850,005 - -0.0
850,007 - -0.7
850,018 + 0.0
850,019 + 1.4
850,026 + 1.1
850,029 - 1.4
850,033 + -0.8
850,035 - -0.8
850,145 - -0.4
850,151 - -1.4
850,157 + 0.0
850,180 - 0.8
850,186 + -0.6
850,319 + 0.2
850,330 + 0.6
850,338 + 0.1
850,446 - 14835 mRNA_6467 0.11 0.4
850,599 - 14835 mRNA_6467 0.16 -0.4
850,747 - 14835 mRNA_6467 0.20 0.5
850,870 + 14835 mRNA_6467 0.24 1.5
850,873 - 14835 mRNA_6467 0.24 1.7
851,384 + 14835 mRNA_6467 0.39 0.5
851,600 - 14835 mRNA_6467 0.46 0.7
851,817 + 14835 mRNA_6467 0.52 -0.1
851,870 + 14835 mRNA_6467 0.54 -0.0
851,876 - 14835 mRNA_6467 0.54 -0.1
852,013 + 14835 mRNA_6467 0.58 -0.7
852,016 - 14835 mRNA_6467 0.58 1.5
852,056 - 14835 mRNA_6467 0.59 0.6
852,333 - 14835 mRNA_6467 0.68 0.7
852,615 - 14835 mRNA_6467 0.76 -0.4
852,648 - 14835 mRNA_6467 0.77 -1.1
853,044 + 14835 mRNA_6467 0.89 2.7
853,284 + 0.2
853,354 + 0.0
853,377 - -0.1
853,382 + 0.6
853,455 + -0.3
853,586 - 1.2
853,589 - 0.7
853,797 - 1.1
853,911 - 2.0
854,032 - 0.1
854,083 + 0.6
854,320 - 14836 mRNA_6468 0.11 3.0