Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6446

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6445: 14813 - KOG2896 UV radiation resistance associated protein, at 810637 to 814255 14813 mRNA_6446: 14814 - Hypothetical Protein, at 814402 to 816229 14814 mRNA_6447: 14815 - Hypothetical Protein, at 816253 to 817256 14815

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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813,631 + 14813 mRNA_6445 0.83 -0.5
813,643 + 14813 mRNA_6445 0.83 -0.5
813,655 - 14813 mRNA_6445 0.83 -0.1
813,664 - 14813 mRNA_6445 0.84 -0.6
813,810 - 14813 mRNA_6445 0.88 0.1
813,890 + 14813 mRNA_6445 0.90 -1.1
813,922 + 1.0
813,929 + 1.0
813,989 - -1.3
814,010 + 1.8
814,041 - -0.1
814,055 - 0.4
814,072 + 1.3
814,076 - 0.2
814,196 - 2.9
814,209 + 0.2
814,211 + -0.0
814,222 + -1.0
814,317 - -1.3
814,335 + 1.0
814,357 + 2.2
814,364 - 0.1
814,487 - 0.2
814,500 - 1.8
814,717 - 14814 mRNA_6446 0.17 0.4
814,718 + 14814 mRNA_6446 0.17 0.5
814,742 - 14814 mRNA_6446 0.19 0.9
814,796 + 14814 mRNA_6446 0.22 1.2
814,881 - 14814 mRNA_6446 0.26 2.0
814,915 - 14814 mRNA_6446 0.28 0.5
814,920 + 14814 mRNA_6446 0.28 2.0
814,977 - 14814 mRNA_6446 0.31 -0.6
815,172 - 14814 mRNA_6446 0.42 -0.4
815,247 + 14814 mRNA_6446 0.46 -2.1
815,420 - 14814 mRNA_6446 0.56 0.8
815,438 - 14814 mRNA_6446 0.57 2.5
815,531 + 14814 mRNA_6446 0.62 1.0
815,546 - 14814 mRNA_6446 0.63 -0.7
815,566 + 14814 mRNA_6446 0.64 1.0
815,621 + 14814 mRNA_6446 0.67 1.8
815,670 + 14814 mRNA_6446 0.69 1.7
815,680 + 14814 mRNA_6446 0.70 0.2
815,797 + 14814 mRNA_6446 0.76 -1.6
815,823 + 14814 mRNA_6446 0.78 -2.3
815,826 - 14814 mRNA_6446 0.78 0.3
815,925 - 14814 mRNA_6446 0.83 1.1
815,928 - 14814 mRNA_6446 0.83 -0.3
815,929 + 14814 mRNA_6446 0.84 0.2
815,930 - 14814 mRNA_6446 0.84 0.3
815,932 - 14814 mRNA_6446 0.84 1.4
816,063 + 2.5
816,069 - 0.8
816,098 + 0.8
816,200 - 1.2
816,580 + 14815 mRNA_6447 0.33 0.2
816,639 + 14815 mRNA_6447 0.38 -0.3
816,944 + 14815 mRNA_6447 0.69 2.1
817,012 + 14815 mRNA_6447 0.76 0.4
817,058 + 14815 mRNA_6447 0.80 -0.1
817,060 - 14815 mRNA_6447 0.80 2.0