Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6406

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6405: 14773 - KOG0725 Reductases with broad range of substrate specificities, at 734995 to 736035 14773 mRNA_6406: 14774 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 736897 to 739297 14774 mRNA_6407: 14775 - HMMPfam-Protein of unknown function (DUF952)-PF06108,SUPERFAMILY--SSF56399, at 739479 to 740196 14775

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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735,919 - 14773 mRNA_6405 0.89 -0.5
736,093 + -2.7
736,096 - 0.5
736,097 + 1.1
736,098 + -0.2
736,099 - 0.1
736,235 - -2.8
736,382 - 0.8
736,444 + -1.0
736,537 + 0.6
736,674 + 0.3
736,682 + 0.4
736,694 - 0.2
736,831 - -0.6
737,128 - 0.7
737,312 - 14774 mRNA_6406 0.17 -0.2
737,453 + 14774 mRNA_6406 0.23 -0.6
737,739 + 14774 mRNA_6406 0.35 -1.1
737,870 - 14774 mRNA_6406 0.41 -1.1
737,871 + 14774 mRNA_6406 0.41 2.3
737,881 + 14774 mRNA_6406 0.41 1.1
738,048 - 14774 mRNA_6406 0.48 -1.5
738,468 + 14774 mRNA_6406 0.65 -0.4
738,884 + 14774 mRNA_6406 0.83 -0.1
739,231 + 0.2
739,509 + -2.4
739,858 - 14775 mRNA_6407 0.53 1.2
739,922 + 14775 mRNA_6407 0.62 1.1
740,097 + 14775 mRNA_6407 0.86 -0.4
740,109 + 14775 mRNA_6407 0.88 0.4
740,118 + 14775 mRNA_6407 0.89 0.6
740,245 + 2.1
740,256 + -0.1