Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6400

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6399: 14767 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 724341 to 725780 14767 mRNA_6400: 14768 - K15720 N4BP2 NEDD4-binding protein 2, at 726204 to 728180 14768

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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725,375 + 14767 mRNA_6399 0.72 0.2
725,812 - -0.4
725,814 - -0.1
725,824 + 1.9
725,830 + 1.4
725,835 - 2.3
725,839 - 1.1
725,978 - 1.0
725,980 - 0.2
726,005 - 0.6
726,013 + 1.1
726,068 - 0.2
726,069 - 0.3
726,095 + 0.5
726,232 - -1.4
726,244 + 1.6
726,386 + 0.1
726,397 + -0.3
726,706 + 14768 mRNA_6400 0.25 -2.3
726,924 + 14768 mRNA_6400 0.36 0.1
726,962 - 14768 mRNA_6400 0.38 -2.3
727,290 + 14768 mRNA_6400 0.55 1.2
727,405 + 14768 mRNA_6400 0.61 -0.5
728,018 + -0.7
728,151 + -0.3
728,334 - 1.7