Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6381

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6380: 14748 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 678421 to 679401 14748 mRNA_6381: 14749 - Interpro F-box-like, at 679604 to 681699 14749 mRNA_6382: 14750 - Hypothetical Protein, at 682281 to 684206 14750

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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678,638 - 14748 mRNA_6380 0.22 -1.7
678,649 - 14748 mRNA_6380 0.23 1.2
678,675 - 14748 mRNA_6380 0.26 -1.0
678,955 + 14748 mRNA_6380 0.54 -0.1
679,249 + 14748 mRNA_6380 0.84 -1.7
679,370 - 3.5
679,439 + -0.0
679,527 - -1.9
679,572 - -1.0
679,980 + 14749 mRNA_6381 0.18 0.7
680,227 - 14749 mRNA_6381 0.30 -1.3
680,228 + 14749 mRNA_6381 0.30 -0.5
680,247 + 14749 mRNA_6381 0.31 2.2
680,531 - 14749 mRNA_6381 0.44 -0.4
680,532 + 14749 mRNA_6381 0.44 -1.0
680,585 - 14749 mRNA_6381 0.47 0.4
680,688 - 14749 mRNA_6381 0.52 0.1
680,707 + 14749 mRNA_6381 0.53 0.9
681,255 + 14749 mRNA_6381 0.79 -0.2
681,671 + 2.4
681,682 - 1.4
681,702 - -1.0
681,727 + -0.5
681,736 + 0.2
681,760 + 0.1
681,858 - -0.3
681,873 - 0.4
681,874 + 1.8
681,881 + 3.1
681,890 - -0.9
681,892 - 0.1
681,896 - 1.4
681,903 + -1.4
681,905 + 0.1
681,927 - -0.0
681,939 - -1.0
682,015 - 0.4
682,021 + 1.4
682,093 + 0.2
682,093 - -0.2
682,096 + 2.6
682,112 + 2.9
682,365 - 0.4
682,650 - 14750 mRNA_6382 0.19 -0.1