Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6375

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6374: 14742 - K20464 OSBPL5_8, ORP5_8 oxysterol-binding protein-related protein 5/8, at 663767 to 666324 14742 mRNA_6375: 14743 - K01178 E3.2.1.3 glucoamylase, at 666615 to 668807 14743 mRNA_6376: 14744 - K14811 DBP3 ATP-dependent RNA helicase DBP3, at 669168 to 671272 14744

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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665,763 + 14742 mRNA_6374 0.78 -0.5
665,891 - 14742 mRNA_6374 0.83 -1.7
665,899 - 14742 mRNA_6374 0.83 1.0
665,900 - 14742 mRNA_6374 0.83 0.8
665,910 + 14742 mRNA_6374 0.84 1.7
665,929 - 14742 mRNA_6374 0.85 -0.5
665,939 + 14742 mRNA_6374 0.85 -2.3
666,026 - 14742 mRNA_6374 0.88 1.8
666,042 + 14742 mRNA_6374 0.89 0.4
666,042 + 14742 mRNA_6374 0.89 0.1
666,045 - 14742 mRNA_6374 0.89 0.4
666,057 - 14742 mRNA_6374 0.90 0.4
666,068 + 14742 mRNA_6374 0.90 -0.2
666,069 + 0.7
666,070 - -1.0
666,070 - -0.6
666,072 + -0.8
666,075 + 0.4
666,174 + 1.1
666,203 - 1.3
666,204 + 0.2
666,205 + 1.0
666,208 - 0.5
666,211 - 0.7
666,215 - 1.3
666,220 + -0.5
666,243 - 0.0
666,341 - -0.8
666,349 - -0.5
666,356 + -2.3
666,392 + -0.4
666,666 - 0.3
666,979 + 14743 mRNA_6375 0.17 0.4
667,258 - 14743 mRNA_6375 0.29 -0.5
667,264 - 14743 mRNA_6375 0.30 1.1
667,608 + 14743 mRNA_6375 0.45 1.1
667,758 + 14743 mRNA_6375 0.52 0.7
667,909 - 14743 mRNA_6375 0.59 1.6
668,192 + 14743 mRNA_6375 0.72 3.8
668,198 - 14743 mRNA_6375 0.72 3.9
668,634 - -0.2
668,752 + 1.3
668,789 - -0.1
668,869 - -1.6
668,918 + 1.6
668,922 - 2.0
668,930 + 0.9
668,936 - -0.0
668,965 + 1.3
668,967 + -1.2
668,998 - 1.9
669,108 + -1.8
669,110 - 0.7
669,111 - 0.7
669,111 - 0.5
669,116 + -1.9
669,119 - -1.1
669,120 + 0.4
669,124 - -0.3
669,125 - -0.4
669,126 - 1.3
669,133 - -1.1
669,134 + -0.5
669,137 + -0.1
669,146 - -0.1
669,274 + -0.9
669,287 + 0.2
669,295 - -1.1
669,302 - -1.4
669,391 + 14744 mRNA_6376 0.11 -0.1
669,564 - 14744 mRNA_6376 0.19 0.5
669,710 - 14744 mRNA_6376 0.26 1.2