Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6370

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6370: 14738 - K15692 RNF13, RZF E3 ubiquitin-protein ligase RNF13, at 655960 to 658637 14738 mRNA_6371: 14739 - HMMPfam-SET domain-PF00856,ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 659092 to 660021 14739

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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655,206 - 1.8
655,229 - 0.8
655,336 - 0.2
655,367 + 0.4
655,372 - -0.6
655,382 + -0.0
655,506 - -0.0
655,638 - 0.0
655,650 - 0.5
655,672 + 0.1
655,690 + 1.2
655,832 - 0.6
655,833 - -0.7
655,841 + 0.0
655,849 + 0.1
655,943 - 0.5
655,966 - 0.8
655,978 + 0.3
656,247 + 14738 mRNA_6370 0.11 -0.4
656,849 - 14738 mRNA_6370 0.33 -0.8
656,858 + 14738 mRNA_6370 0.34 1.6
657,090 + 14738 mRNA_6370 0.42 1.5
657,567 + 14738 mRNA_6370 0.60 -0.3
657,971 - 14738 mRNA_6370 0.75 0.9
657,992 - 14738 mRNA_6370 0.76 1.4
658,575 - 0.5
658,598 + 0.8
658,603 + -1.7
658,723 - 0.7
658,728 + 0.8
658,872 - 0.3
658,888 + 2.8
658,889 + 0.1
658,897 - -0.2
658,898 - 2.5
658,900 + 1.0
658,907 - -0.6
658,914 + 1.1
658,915 - 0.3
658,916 + -1.4
658,921 + -1.1
658,930 + -0.3
658,950 - 0.1
659,031 - 2.1
659,044 - 1.1
659,187 + 14739 mRNA_6371 0.10 0.1
659,346 - 14739 mRNA_6371 0.27 -1.5