Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6364

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6363: 14731 - K14553 UTP18 U3 small nucleolar RNA-associated protein 18, at 641098 to 643745 14731 mRNA_6364: 14732 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 643685 to 645198 14732 mRNA_6365: 14733 - HMMPfam-Trypsin-like peptidase domain-PF13365,SUPERFAMILY--SSF50494, at 645356 to 646894 14733

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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643,426 + 14731 mRNA_6363 0.88 0.4
643,428 + 14731 mRNA_6363 0.88 -1.2
643,448 - 14731 mRNA_6363 0.89 -1.0
644,012 - 14732 mRNA_6364 0.22 2.6
644,412 - 14732 mRNA_6364 0.48 2.0
644,571 - 14732 mRNA_6364 0.59 2.1
644,871 + 14732 mRNA_6364 0.78 1.5
645,179 + 0.3
645,181 + -0.0
645,298 - 0.3
645,310 - 1.9
645,313 + 1.8
645,313 + 0.0
645,336 - 1.0
645,340 + 0.1
645,477 + -1.2
645,484 - -0.1
645,509 + 1.3
645,636 + 14733 mRNA_6365 0.18 3.5
645,785 + 14733 mRNA_6365 0.28 0.6
645,793 - 14733 mRNA_6365 0.28 -3.3
645,930 - 14733 mRNA_6365 0.37 1.2
646,092 + 14733 mRNA_6365 0.48 0.7