Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6358

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6357: 14725 - HMMPfam-Ribonuclease-III-like-PF14622,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 625367 to 626592 14725 mRNA_6358: 14726 - KOG1674 Cyclin, at 627075 to 629360 14726

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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626,643 - -0.4
626,648 - -1.7
626,660 - 0.0
626,662 - 2.1
626,663 - -0.4
626,669 - 0.4
626,672 + 0.6
626,672 + 0.5
626,672 + -0.4
626,673 + 1.0
626,778 - 0.2
626,783 - -0.3
626,783 - -1.2
626,803 - 1.2
626,929 + -0.8
626,937 - 0.8
626,952 - -0.6
626,957 + 1.5
626,967 - -0.4
627,070 + 0.0
627,088 - -0.6
627,538 - 14726 mRNA_6358 0.20 2.5
627,565 - 14726 mRNA_6358 0.21 2.8
627,675 + 14726 mRNA_6358 0.26 -0.8
627,702 - 14726 mRNA_6358 0.27 0.1
628,175 + 14726 mRNA_6358 0.48 -0.2
628,417 - 14726 mRNA_6358 0.59 -0.1
628,875 + 14726 mRNA_6358 0.79 0.8
629,148 - 0.5
629,177 + 0.5
629,181 + 1.1
629,314 - 1.0
629,317 + -0.1
629,341 + 0.1
629,345 - -0.7
629,358 + 0.3
629,419 + -0.4
629,467 + 0.2
629,472 + -0.5
629,481 - -0.0
629,484 - -0.1
629,487 + -0.6
629,499 + 0.8
629,507 - 1.3
629,510 + 0.9
629,512 + -0.6
629,537 + -0.6
629,612 + 0.3
629,632 - -1.2
629,633 - 0.1
629,640 - 2.0
629,689 - 0.5
629,694 + 1.5
629,697 + -0.5
629,729 - -0.9
629,794 + -0.3
629,797 + 0.0
629,809 - 0.2
629,812 - 0.0
629,827 - 0.7
629,842 - 0.1
629,850 + -0.2
629,858 - 0.1
629,859 + 1.0
629,864 + 0.9
629,893 - -0.5
629,899 + -0.5
629,902 + 2.3
629,903 - -0.2
629,911 + 2.2
629,917 - 0.3
629,919 - 0.7
629,926 + 1.1
629,956 + -0.1
629,958 + 0.9
629,959 - 0.0
629,976 - 1.7
629,984 + 0.8
629,985 + -0.9
630,000 - -0.6
630,003 + 0.9
630,004 + 2.7
630,008 + -0.1
630,010 + 0.8
630,013 - 0.3
630,024 + 1.9
630,036 - -1.4
630,040 - 1.7
630,041 + 0.2
630,056 - 1.7
630,064 - -0.2
630,159 + -1.2
630,165 - -0.1
630,169 - -1.2
630,183 + 2.3
630,198 - 0.2
630,220 + 0.7
630,234 + -0.7
630,280 + 0.6
630,281 + 0.0
630,285 - -0.4
630,312 - -0.1
630,325 + 0.7
630,343 - -1.1
630,351 + -0.1
630,355 - 1.0
630,355 - 0.4