Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6355

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6354: 14722 - BLAST Mei2p [Pneumocystis carinii], at 616864 to 619118 14722 mRNA_6355: 14723 - KOG4532 WD40-like repeat containing protein, at 619648 to 622272 14723 mRNA_6356: 14724 - K01477 alc, ALLC allantoicase, at 622458 to 625058 14724

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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619,506 - -0.1
619,815 + 2.8
619,978 + 14723 mRNA_6355 0.13 -0.5
619,979 - 14723 mRNA_6355 0.13 -1.0
620,112 + 14723 mRNA_6355 0.18 0.3
620,116 - 14723 mRNA_6355 0.18 0.2
620,861 + 14723 mRNA_6355 0.46 0.1
620,880 - 14723 mRNA_6355 0.47 0.2
621,009 + 14723 mRNA_6355 0.52 1.1
621,459 + 14723 mRNA_6355 0.69 0.1
621,609 - 14723 mRNA_6355 0.75 -0.7
621,877 + 14723 mRNA_6355 0.85 1.2
622,314 - 1.9
622,329 - -1.4
622,329 - -1.6
622,340 + 0.3
622,368 + 2.3
622,369 - -3.8
622,935 - 14724 mRNA_6356 0.18 0.3
623,229 - 14724 mRNA_6356 0.30 -1.7