Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6354

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6353: 14721 - KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins, at 616039 to 616629 14721 mRNA_6354: 14722 - BLAST Mei2p [Pneumocystis carinii], at 616864 to 619118 14722 mRNA_6355: 14723 - KOG4532 WD40-like repeat containing protein, at 619648 to 622272 14723

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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615,979 - 1.4
616,062 - -0.1
616,539 - 14721 mRNA_6353 0.85 -0.6
616,540 - 14721 mRNA_6353 0.85 -1.4
616,547 + 14721 mRNA_6353 0.86 -1.8
616,703 + -1.7
616,713 + -0.6
616,725 - 0.4
617,408 - 14722 mRNA_6354 0.24 0.7
617,423 - 14722 mRNA_6354 0.25 0.1
617,431 + 14722 mRNA_6354 0.25 -1.6
617,545 - 14722 mRNA_6354 0.30 2.5
617,567 + 14722 mRNA_6354 0.31 1.8
617,726 + 14722 mRNA_6354 0.38 0.5
617,726 - 14722 mRNA_6354 0.38 1.9
618,471 + 14722 mRNA_6354 0.71 1.5
618,640 + 14722 mRNA_6354 0.79 2.4
619,506 - -0.1
619,815 + 2.8
619,978 + 14723 mRNA_6355 0.13 -0.5
619,979 - 14723 mRNA_6355 0.13 -1.0
620,112 + 14723 mRNA_6355 0.18 0.3
620,116 - 14723 mRNA_6355 0.18 0.2