Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6348

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6347: 14715 - Hypothetical Protein, at 601204 to 601756 14715 mRNA_6348: 14716 - K11373 ELP1, IKI3, IKBKAP elongator complex protein 1, at 601835 to 607122 14716 mRNA_6349: 14717 - BLAST NADH dehydrogenase [ubiquinone] 1 beta subcomplex..., at 607266 to 607793 14717

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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601,040 + 0.5
601,193 + 1.7
601,341 + 14715 mRNA_6347 0.25 0.0
601,464 - 14715 mRNA_6347 0.47 2.7
601,481 + 14715 mRNA_6347 0.50 2.7
601,487 - 14715 mRNA_6347 0.51 0.5
601,649 - 14715 mRNA_6347 0.80 1.8
601,747 - 0.7
601,761 - 0.9
601,801 + 2.6
601,938 - 0.3
602,339 - 1.0
602,816 - 14716 mRNA_6348 0.19 -0.7
603,086 - 14716 mRNA_6348 0.24 -1.5
603,255 + 14716 mRNA_6348 0.27 -0.5
603,280 - 14716 mRNA_6348 0.27 0.7
603,764 - 14716 mRNA_6348 0.36 -0.3
604,172 + 14716 mRNA_6348 0.44 0.5
604,399 + 14716 mRNA_6348 0.48 -0.3
604,885 + 14716 mRNA_6348 0.58 0.0
605,182 - 14716 mRNA_6348 0.63 0.6
605,636 - 14716 mRNA_6348 0.72 -0.4
606,052 - 14716 mRNA_6348 0.80 0.3
606,922 + 0.4
607,072 - -0.4
607,107 + 0.3
607,197 + 0.5
607,202 - -0.5
607,223 - -0.4
608,075 - -0.4
608,086 - -0.2
608,122 + 0.8