Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6332

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6331: 14699 - Hypothetical Protein, at 562963 to 566521 14699 mRNA_6332: 14700 - KOG0725 Reductases with broad range of substrate specificities, at 566790 to 568565 14700 mRNA_6333: 14701 - K08852 ERN1 serine/threonine-protein kinase/endoribonuclease IRE1, at 569100 to 573400 14701

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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565,866 + 14699 mRNA_6331 0.82 1.0
565,910 + 14699 mRNA_6331 0.83 -1.2
566,026 + 14699 mRNA_6331 0.86 -0.1
566,041 - 14699 mRNA_6331 0.86 -0.1
566,041 - 14699 mRNA_6331 0.86 0.1
566,452 - -0.3
566,515 - -0.6
566,521 + 1.3
566,530 + 0.0
566,541 + 0.2
566,626 - 0.1
566,654 - -0.9
566,657 + 1.3
566,658 - -0.5
566,749 - 0.4
566,816 - 1.8
566,901 + -0.3
566,929 + 0.0
567,109 + 14700 mRNA_6332 0.18 -0.3
567,228 - 14700 mRNA_6332 0.25 1.2
567,745 - 14700 mRNA_6332 0.54 0.8
568,025 + 14700 mRNA_6332 0.70 -0.2
568,213 - 14700 mRNA_6332 0.80 1.2
568,343 - 14700 mRNA_6332 0.87 0.8
568,481 + 0.2
568,621 - -2.1
568,628 + -0.8
568,629 + -0.4
568,642 - -0.6
568,648 + 0.8
568,768 - -0.0
568,799 - 0.0
568,802 - -0.8
568,816 + -1.0
568,817 + -1.7
568,819 - 0.4
568,837 + 0.4
568,876 + 1.6