Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6318

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6317: 14685 - K11649 SMARCC SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C, at 532881 to 534866 14685 mRNA_6318: 14686 - Hypothetical Protein, at 535354 to 538435 14686 mRNA_6319: 14687 - KOG1729 FYVE finger containing protein, at 538943 to 540662 14687

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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534,906 + 1.0
534,916 - 1.4
534,924 - -0.1
534,925 + -0.2
534,926 + -0.7
534,936 + 0.8
535,061 + -1.6
535,211 + 3.3
535,217 + -0.9
535,489 - 0.2
535,530 + 0.1
535,828 + 14686 mRNA_6318 0.15 0.4
536,134 + 14686 mRNA_6318 0.25 1.3
536,544 - 14686 mRNA_6318 0.39 0.5
537,422 - 14686 mRNA_6318 0.67 0.0
537,446 - 14686 mRNA_6318 0.68 -0.0
537,730 + 14686 mRNA_6318 0.77 0.5
537,764 - 14686 mRNA_6318 0.78 1.2
537,901 - 14686 mRNA_6318 0.83 1.4
538,199 - -0.2
538,377 + 0.8
538,450 + -0.4
538,485 - -1.9
538,769 + 0.0
538,772 + -0.3
538,915 - 0.8
539,219 + 14687 mRNA_6319 0.16 0.7
539,331 + 14687 mRNA_6319 0.23 -0.6