Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6306

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487533 to 494216 14674 mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494501 to 498811 14675

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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486,564 - -0.2
486,641 + 0.5
486,657 - 0.9
486,779 - 0.3
486,782 - -1.6
486,812 + 0.4
486,957 + 2.3
486,962 - 2.0
486,963 + 3.6
486,980 - -0.4
486,981 + -0.2
487,111 + 0.3
487,247 - -0.1
487,372 + 1.6
487,561 - 0.2
488,091 + -0.8
488,117 - 1.4
488,124 + 0.3
488,286 - 14674 mRNA_6306 0.11 0.6
489,269 - 14674 mRNA_6306 0.26 -1.5
489,281 - 14674 mRNA_6306 0.26 -0.2
489,605 - 14674 mRNA_6306 0.31 -1.0
489,721 + 14674 mRNA_6306 0.33 1.6
489,731 + 14674 mRNA_6306 0.33 1.0
490,438 - 14674 mRNA_6306 0.43 -0.2
490,459 + 14674 mRNA_6306 0.44 0.9
490,903 - 14674 mRNA_6306 0.50 2.8
491,341 + 14674 mRNA_6306 0.57 -0.2
491,727 + 14674 mRNA_6306 0.63 0.1
491,730 - 14674 mRNA_6306 0.63 -0.9
491,788 + 14674 mRNA_6306 0.64 -1.1
492,952 - 14674 mRNA_6306 0.81 0.6
493,022 + 14674 mRNA_6306 0.82 0.5
493,236 + 14674 mRNA_6306 0.85 1.1
493,554 - 1.4
494,285 - -0.8
494,308 - -0.6
494,415 + 0.4
494,446 - -0.7
494,463 + 1.3
494,591 + 1.4
494,604 - 1.5
494,604 - 2.4
494,613 + -1.4
494,615 - -0.0
494,643 + -0.7
494,755 - 1.1
494,779 - 0.9
494,881 - 2.2
494,893 - 0.8
494,894 + -0.8
494,900 - 2.2
494,909 + 1.5
494,912 - 0.2
494,917 + 0.4
494,930 + 0.1
494,943 - 14675 mRNA_6307 0.10 0.7
495,071 - 14675 mRNA_6307 0.13 0.9
495,208 - 14675 mRNA_6307 0.16 1.3