Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6287

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6286: 14654 - HMMPfam-Protein of unknown function (DUF3128)-PF11326, at 444214 to 444568 14654 mRNA_6287: 14655 - K01262 pepP Xaa-Pro aminopeptidase, at 445052 to 447744 14655 mRNA_6288: 14656 - KOG0876 Manganese superoxide dismutase, at 448035 to 449039 14656

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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444,722 - 0.5
444,853 - 0.7
444,867 - -0.5
444,868 - 2.7
444,872 + -1.8
444,978 + -0.7
445,014 - 0.8
445,015 - 1.0
445,021 - 1.3
445,036 - 0.6
445,050 - -1.4
445,052 - 1.4
445,059 + 0.3
445,144 + -1.5
445,168 - -0.7
445,177 - 0.2
445,177 + -0.0
445,209 + -0.2
445,212 + -0.1
445,221 - 0.8
445,287 + 0.5
445,333 - 14655 mRNA_6287 0.10 1.3
445,347 - 14655 mRNA_6287 0.11 1.4
445,351 + 14655 mRNA_6287 0.11 0.7
445,670 + 14655 mRNA_6287 0.23 1.3
445,726 + 14655 mRNA_6287 0.25 -0.4
445,759 - 14655 mRNA_6287 0.26 0.9
445,767 - 14655 mRNA_6287 0.27 0.1
446,147 + 14655 mRNA_6287 0.41 -1.8
446,331 + 14655 mRNA_6287 0.47 2.4
446,660 - 14655 mRNA_6287 0.60 0.7
446,680 + 14655 mRNA_6287 0.60 0.3
447,210 - 14655 mRNA_6287 0.80 -0.3
447,778 - -1.2
447,957 + 2.9
448,489 - 14656 mRNA_6288 0.45 1.7
448,520 + 14656 mRNA_6288 0.48 -0.0