Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6282

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6280: 14648 - K14050 RABGGTA geranylgeranyl transferase type-2 subunit alpha, at 431030 to 432502 14648 mRNA_6281: 14649 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 432804 to 433205 14649 mRNA_6282: 14650 - HMMPfam-SET domain-PF00856,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-SET domain profile.-PS50280,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SMART-SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-SM00317,SUPERFAMILY--SSF48452,SUPERFAMILY--SSF82199, at 433495 to 438419 14650 mRNA_6283: 14651 - HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879, at 438750 to 440581 14651

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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432,700 - 0.7
432,715 + 2.3
432,878 - 14649 mRNA_6281 0.18 -1.1
432,896 + 14649 mRNA_6281 0.23 1.4
433,280 + 0.5
433,300 - -0.4
433,326 + 3.1
433,577 - -0.3
433,813 + 0.9
433,878 - -1.0
434,023 - 14650 mRNA_6282 0.11 0.6
434,471 - 14650 mRNA_6282 0.20 1.7
434,487 + 14650 mRNA_6282 0.20 1.8
434,496 + 14650 mRNA_6282 0.20 1.0
434,616 + 14650 mRNA_6282 0.23 0.8
434,763 + 14650 mRNA_6282 0.26 0.9
434,797 - 14650 mRNA_6282 0.26 0.7
434,927 + 14650 mRNA_6282 0.29 -1.4
436,090 - 14650 mRNA_6282 0.53 2.0
436,287 - 14650 mRNA_6282 0.57 0.9
436,382 - 14650 mRNA_6282 0.59 1.7
436,382 - 14650 mRNA_6282 0.59 0.7
437,312 + 14650 mRNA_6282 0.78 -0.5
438,347 + 2.1
438,446 + 0.9
438,600 - 0.7
438,758 + -0.8
438,882 + -0.1