Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6276

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6275: 14643 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 420027 to 422108 14643 mRNA_6276: 14644 - K12615 EDC3 enhancer of mRNA-decapping protein 3, at 422902 to 424921 14644 mRNA_6277: 14645 - KOG2812 Uncharacterized conserved protein, at 425050 to 426717 14645

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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421,911 + 2.9
421,925 + 0.1
422,006 + 0.6
422,031 + -0.7
422,356 - 0.1
422,361 + 0.0
422,377 - -0.1
422,386 - -0.0
422,400 + 0.7
422,484 - 0.3
422,496 - 1.8
422,509 + -0.2
422,511 + 0.7
422,526 - 0.3
422,668 - 1.7
422,671 - 1.4
422,676 - -1.5
422,681 + 1.3
422,684 + 2.0
422,706 + 0.3
422,816 - 2.6
422,816 + -0.7
422,828 + -2.2
422,842 + -0.5
422,845 + -0.0
422,847 + -0.4
422,970 + -1.7
422,972 + -0.7
422,973 - 0.6
422,977 + 0.2
422,979 + -0.4
422,979 + -0.5
422,996 - 0.3
423,117 + 14644 mRNA_6276 0.11 -1.2
423,127 - 14644 mRNA_6276 0.11 -0.0
423,277 + 14644 mRNA_6276 0.19 1.3
423,575 + 14644 mRNA_6276 0.33 2.3
423,844 + 14644 mRNA_6276 0.47 -0.1
423,870 + 14644 mRNA_6276 0.48 1.3
423,985 + 14644 mRNA_6276 0.54 0.9
424,067 + 14644 mRNA_6276 0.58 -1.8
424,288 + 14644 mRNA_6276 0.69 -0.6
424,886 - 2.7
424,897 - 1.9