Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6267

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6266: 14634 - Hypothetical Protein, at 396556 to 399256 14634 mRNA_6267: 14635 - KOG1721 FOG Zn-finger, at 399476 to 403885 14635 mRNA_6268: 14636 - HMMPfam-Survival motor neuron protein (SMN)-PF06003, at 404053 to 405342 14636

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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398,544 + 14634 mRNA_6266 0.74 2.0
399,156 - 1.4
399,162 - -0.2
399,165 - -0.4
399,179 - 0.3
399,185 + 0.4
399,188 - -1.5
399,300 - 0.7
399,305 - -0.4
399,305 - -1.3
399,306 - -0.4
399,315 + 1.2
399,316 - -2.9
399,316 - -0.4
399,318 - -0.3
399,324 - -0.4
399,325 + -1.0
399,338 + 0.6
399,344 - 0.0
399,349 - 1.5
399,489 + 0.0
399,523 + -0.6
399,654 + -1.8
399,796 - 0.4
399,915 - 0.7
400,496 - 14635 mRNA_6267 0.23 0.2
401,055 + 14635 mRNA_6267 0.36 2.4
401,263 - 14635 mRNA_6267 0.41 2.2
401,636 - 14635 mRNA_6267 0.49 -0.3
402,015 + 14635 mRNA_6267 0.58 1.0
402,045 + 14635 mRNA_6267 0.58 0.4
402,328 + 14635 mRNA_6267 0.65 1.1
402,496 - 14635 mRNA_6267 0.68 0.2
402,816 + 14635 mRNA_6267 0.76 -0.6
402,901 - 14635 mRNA_6267 0.78 1.8
403,180 - 14635 mRNA_6267 0.84 1.6
403,184 + 14635 mRNA_6267 0.84 0.3
403,341 + 14635 mRNA_6267 0.88 -1.7
403,477 + 0.8
403,491 + -0.1
403,496 - -0.8
403,517 - -2.1
403,521 - 0.6
403,641 - -2.5
403,663 + 1.7
403,667 - 0.3
403,667 - 1.6
403,673 + -0.8
403,683 + 0.3
403,684 + -2.0
403,699 + -0.2
403,945 - 0.1
403,952 - 0.5
403,967 + -1.3
403,973 + 2.6
403,973 + 0.6
403,982 - -0.0
403,985 - 0.2
403,986 + -1.0
403,986 + 2.1
403,989 + 0.4
403,994 - 2.5
403,995 + -0.5
403,998 + 1.4
403,999 - 0.5
404,000 + -0.2
404,005 + 1.3
404,007 + -0.4
404,013 + -1.2
404,021 + 0.8
404,126 - -0.4
404,133 - 0.1
404,139 - 0.3
404,143 + -0.4
404,159 + -0.8
404,164 - 0.9
404,164 - -0.6
404,288 - 14636 mRNA_6268 0.18 0.0
404,299 - 14636 mRNA_6268 0.19 2.5