Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6242

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6241: 14609 - Hypothetical Protein, at 333735 to 334704 14609 mRNA_6242: 14610 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 335352 to 337546 14610 mRNA_6243: 14611 - Hypothetical Protein, at 337932 to 340072 14611

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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334,402 + 14609 mRNA_6241 0.69 0.8
334,534 - 14609 mRNA_6241 0.82 0.7
334,682 + 0.6
334,682 - 1.1
334,705 + -2.7
334,938 + 0.5
335,105 - 0.1
335,214 + -1.0
335,268 - -0.8
335,289 - 0.1
335,292 + -1.7
335,384 + -1.5
335,432 - 1.2
335,433 + -0.8
335,494 + -0.8
335,574 - 14610 mRNA_6242 0.10 0.1
335,597 + 14610 mRNA_6242 0.11 0.6
335,741 + 14610 mRNA_6242 0.18 0.4
335,753 + 14610 mRNA_6242 0.18 0.8
336,063 - 14610 mRNA_6242 0.32 -0.4
336,189 + 14610 mRNA_6242 0.38 1.3
336,663 + 14610 mRNA_6242 0.60 0.7
336,764 - 14610 mRNA_6242 0.64 0.9
336,776 + 14610 mRNA_6242 0.65 -0.0
337,073 + 14610 mRNA_6242 0.78 0.5
337,340 + 1.1
337,646 + 0.1
337,784 - 1.6
338,228 + 14611 mRNA_6243 0.14 -0.2
338,399 + 14611 mRNA_6243 0.22 1.0